View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_122 (Length: 244)
Name: NF3223_low_122
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_122 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37592518 - 37592294
Alignment:
| Q |
1 |
atagcagcattcattgcagtgtttccaatatatagacactgtcactatcataatcatcaatactactaactaacaaggacctaaaattgtactacgcaca |
100 |
Q |
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| T |
37592518 |
atagcagcattcattgcagtgtttccaatatatagacactgtcactatcataatcatcaatactactaactaacaaggacctaaaattgtactacgcaaa |
37592419 |
T |
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| Q |
101 |
cagataggaacgaaaatggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaagcattgataggggaacacaacaaccaacttgtcc |
200 |
Q |
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| T |
37592418 |
cagataggaacgaaaatggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaaccattgataggggaacacaacaaccaacttgtcc |
37592319 |
T |
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| Q |
201 |
atgcaaacaaagatcatcattatcc |
225 |
Q |
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| T |
37592318 |
atgcaaacaaagatcatcattatcc |
37592294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 37461886 - 37461995
Alignment:
| Q |
116 |
atggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaagcattgataggggaacacaacaaccaacttgtccatgcaaacaaagatc |
215 |
Q |
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||||| ||||||||||| |||| | ||| || ||||||||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
37461886 |
atggatatcaaagaggatgtggaaggtggcaaacagaaaggaataagagaaccattgataggtgaacaaaacaaccaacttgtccatgcaaacaaagatc |
37461985 |
T |
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| Q |
216 |
atcattatcc |
225 |
Q |
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| T |
37461986 |
atcatcatcc |
37461995 |
T |
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