View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_124 (Length: 244)
Name: NF3223_low_124
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_124 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 616495 - 616269
Alignment:
| Q |
1 |
atataatattataaaaaagagaggatattgagtgtgtggctaagatgtaacaattgagaaaaatagaaagaaattcacctgaaagaatccatttccgtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| |
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| T |
616495 |
atataatattataaaaaagagaggatattgagtgtgtggctaagatgtaacaattgagaaaaatagaaagaaattcacctgagaaaatccattcccgtct |
616396 |
T |
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| Q |
101 |
caactatgatactatatatttataatttacgattaaccagcttttaaaccttttggactcaacaaacataaagtttatagttacctaatcttgcaattag |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
616395 |
caactatgatactatatatttataatttacaattaaccagcttttaaaccttttggactcaacaaacataaagtttatagttacctaatcttgcaattag |
616296 |
T |
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| Q |
201 |
caatttgtttactaccactatttagtt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
616295 |
caatttgtttactaccactatttagtt |
616269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 8004872 - 8004933
Alignment:
| Q |
3 |
ataatattataaaaaagagaggatattgagtgtgtggctaagatgtaacaattgagaaaaat |
64 |
Q |
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| T |
8004872 |
ataatattataaagaaaataagatattgagtgtgtggttgagatgtaacaatcgagtaaaat |
8004933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46639909 - 46639848
Alignment:
| Q |
1 |
atataatattataaaaaagagaggatattgagtgtgtggctaagatgtaacaattgagaaaa |
62 |
Q |
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| T |
46639909 |
atataatattataaagaaaagaggatattgagtgcgtggttgagatgtagcaattgagaaaa |
46639848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 18373103 - 18373165
Alignment:
| Q |
1 |
atataatattataaaaaagagaggatattgagtgtgtggctaagatgtaacaattgagaaaaa |
63 |
Q |
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||||||||||||||| | |||||||| |||||| |||| | ||||||||||||||||||||| |
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| T |
18373103 |
atataatattataaagtaaagaggataatgagtgcgtggttgagatgtaacaattgagaaaaa |
18373165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35012121 - 35012184
Alignment:
| Q |
1 |
atataatattataaaaaagagaggatattgagtgtgtggctaagatgtaacaattgagaaaaat |
64 |
Q |
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||||||||||||||| | |||||||||||||||||||| | || || ||| |||||||||||| |
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| T |
35012121 |
atataatattataaagattagaggatattgagtgtgtggttgagctgaaacgattgagaaaaat |
35012184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39129065 - 39129004
Alignment:
| Q |
1 |
atataatattataaaaaagagaggatattgagtgtgtggctaagatgtaacaattgagaaaa |
62 |
Q |
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|||||| ||| |||| || ||| || ||||||| ||||| |||||||||||||||||||||| |
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| T |
39129065 |
atataaaattgtaaagaaaagatgacattgagtttgtggttaagatgtaacaattgagaaaa |
39129004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 3820815 - 3820770
Alignment:
| Q |
20 |
agaggatattgagtgtgtggctaagatgtaacaattgagaaaaata |
65 |
Q |
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|||| ||||| |||||| || ||||||||||||||||||||||||| |
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| T |
3820815 |
agagtatattaagtgtgaggttaagatgtaacaattgagaaaaata |
3820770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2730 - 2818
Alignment:
| Q |
1 |
atataatattataaaaaagagaggatattgagtgtgtggctaagatgtaacaattgagaaaaatagaaagaaattcacctgaaagaatc |
89 |
Q |
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|||||| ||| |||| || |||| ||||| | ||||||| | | |||||||||||||||||||| || |||||| ||| ||| |||||| |
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| T |
2730 |
atataaaattgtaaagaaaagagaatattaaatgtgtggttgaaatgtaacaattgagaaaaattgagagaaatacacttgagagaatc |
2818 |
T |
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