View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_127 (Length: 243)
Name: NF3223_low_127
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_127 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 6214963 - 6215216
Alignment:
| Q |
1 |
ccaacactttaaatttaatcagatagtctatccgttatttgttataggttcatcaaccatc----------------------taagcagactactctac |
78 |
Q |
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| T |
6214963 |
ccaacactttaaatttaatcagatagtctatccgttatttgttataggttcatcaaccatcagctaacttatcagacagaatctaagcagactactctac |
6215062 |
T |
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| Q |
79 |
tcgagctggttccgatttcgcatactataaatacaaaatagaatgcaacttacagagtaactagcaccatattttgttgcagatgaattacaaactgggg |
178 |
Q |
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| T |
6215063 |
tcgagctggttccgatttcgcatactataaatacaaaatagaatgcaacttacagagtaactagcaccatattttgttgcagatgaattacaaactgggg |
6215162 |
T |
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| Q |
179 |
catatatgttgtaaacgtcaatatttccaagctcatcatctgctctattttcat |
232 |
Q |
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| T |
6215163 |
catatatgttgtaaacgtcaatatttccaagctcatcatctgctatattttcat |
6215216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 6207378 - 6207534
Alignment:
| Q |
62 |
taagcagactactctactcgagctggttccgatttcgcatactataaatacaaaatagaatgcaacttacagagtaactagcaccatattttgttgcaga |
161 |
Q |
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| T |
6207378 |
taagcagactaatctactcgagctagttccgattttgcataccatatatacaaaaaagaatgtaacttacaaagtaactagctccattttttgttgcaga |
6207477 |
T |
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| Q |
162 |
tgaattacaaactggggcatatatgttgtaaacgtcaatatttccaagctcatcatc |
218 |
Q |
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| T |
6207478 |
tgaattacaaactggggcatatatgttgtaaacgtcaatatctacaagctcatcatc |
6207534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 6177563 - 6177638
Alignment:
| Q |
150 |
ttttgttgcagatgaattacaaactggggcatatatgttgtaaacgtcaatatttccaagctcatcatctgctcta |
225 |
Q |
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| T |
6177563 |
ttttgttgcagatgaattacaaaatggggcatatatgttgtaaatgtcaatatttcctaactcatcatttgctcta |
6177638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 6207293 - 6207340
Alignment:
| Q |
14 |
tttaatcagatagtctatccgttatttgttataggttcatcaaccatc |
61 |
Q |
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| T |
6207293 |
tttaatcagatagtctatccgttatttgctatagattcatctaccatc |
6207340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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