View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_132 (Length: 238)

Name: NF3223_low_132
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_132
NF3223_low_132
[»] chr4 (1 HSPs)
chr4 (1-223)||(54258625-54258847)
[»] chr5 (1 HSPs)
chr5 (1-221)||(2558244-2558464)
[»] chr3 (2 HSPs)
chr3 (87-223)||(11201594-11201736)
chr3 (87-223)||(11205517-11205659)
[»] chr2 (2 HSPs)
chr2 (87-188)||(10055812-10055917)
chr2 (87-188)||(10033900-10034005)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 54258847 - 54258625
Alignment:
Q  1 ctccaacacattgttaatcatgttttcatgtatttactgcaactataaatcatattatgtatcatacataagaaacgttgtacaaataaatcatttatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  54258847 ctccaacacattgttaatcatgttttcatgtatttactgcaactataaatcatattatgtatcatacgtaagaaatgttgtacaaataaatcatttatgt 54258748  T
Q  101 aatttcaaatgtatgtaaacaaaattaaatctgattacatttatttctcttacatttgtgcaggaaataaaagtggaggaggaagtctcgtattcaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54258747 aatttcaaatgtatgtaaacaaaattaaatctgattacatttatttctcttacatttgtgcaggaaataaaagtggaggaggaagtctcgtattcaattg 54258648  T
Q  201 agagaagtcttaaggaggaaact 223  Q
    |||||||||||||||||||||||    
T  54258647 agagaagtcttaaggaggaaact 54258625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2558464 - 2558244
Alignment:
Q  1 ctccaacacattgttaatcatgttttcatgtatttactgcaactataaatcatattatgtatcatacataagaaacgttgtacaaataaatcatttatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2558464 ctccaacacattgttaatcatgttttcatgtatttactgcaactataaatcatattatgtatcatacataagaaacgttgtacaaataaatcatttatgt 2558365  T
Q  101 aatttcaaatgtatgtaaacaaaattaaatctgattacatttatttctcttacatttgtgcaggaaataaaagtggaggaggaagtctcgtattcaattg 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2558364 aatttcaaatgtatgtaaacaaaattaaatctgattaaatttatttcttttacatttgtgcaggaaataaaagtggaggaggaagtctcgtattcaattg 2558265  T
Q  201 agagaagtcttaaggaggaaa 221  Q
    ||||||| |||||||||||||    
T  2558264 agagaagccttaaggaggaaa 2558244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 11201736 - 11201594
Alignment:
Q  87 taaatcatttatgtaatttcaaatgtatgtaaacaaaattaaatctgattacatttatt------tctcttacatttgtgcaggaaataaaagtggagga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||||||||||||||||||||||    
T  11201736 taaatcatttatgtaatttcaaatgtatgtaaacaaaattaaatctggttacatttatttttctctctcttacatttgtgcaggaaataaaagtggagga 11201637  T
Q  181 ggaagtctcgtattcaattgagagaagtcttaaggaggaaact 223  Q
    |||||| || ||||||||||||||||  |||||| | ||||||    
T  11201636 ggaagtttcatattcaattgagagaaaccttaagaacgaaact 11201594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 11205659 - 11205517
Alignment:
Q  87 taaatcatttatgtaatttcaaatgtatgtaaacaaaattaaatctgattacatttatt------tctcttacatttgtgcaggaaataaaagtggagga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||||||||||||||||||||||    
T  11205659 taaatcatttatgtaatttcaaatgtatgtaaacaaaattaaatctggttacatttatttttctctctcttacatttgtgcaggaaataaaagtggagga 11205560  T
Q  181 ggaagtctcgtattcaattgagagaagtcttaaggaggaaact 223  Q
    |||||| || ||||||||||||||||  |||||| | ||||||    
T  11205559 ggaagtttcatattcaattgagagaaaccttaagaacgaaact 11205517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 10055917 - 10055812
Alignment:
Q  87 taaatcatttatgtaatttcaaatgtatgtaaacaaaattaaatctgattacattt----atttctcttacatttgtgcaggaaataaaagtggaggagg 182  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||||||||||||    
T  10055917 taaatcatttatataatttcaaatgtatgtaaacaaaattaaatctgattacatttatttatttctcttatatttgtgcaggaaataaaagtggaggagg 10055818  T
Q  183 aagtct 188  Q
    ||||||    
T  10055817 aagtct 10055812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 10034005 - 10033900
Alignment:
Q  87 taaatcatttatgtaatttcaaatgtatgtaaacaaaattaaatctgatta----catttatttctcttacatttgtgcaggaaataaaagtggaggagg 182  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||     |||||||||||||| |||||| ||||||||||||||||||||||    
T  10034005 taaatcatttatataatttcaaatgtatgtaaacaaaattaaatctgattatatttatttatttctcttatatttgttcaggaaataaaagtggaggagg 10033906  T
Q  183 aagtct 188  Q
    ||||||    
T  10033905 aagtct 10033900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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