View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_137 (Length: 237)
Name: NF3223_low_137
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_137 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32126811 - 32127015
Alignment:
| Q |
1 |
attctaaagttactctaaagtaataatctttacagtnnnnnnngtaatactttatccaagtcttctaaaactaaacttgtgaccattgctgccacttttc |
100 |
Q |
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| T |
32126811 |
attctaaagttactctaaagtaataatctttacagtaaaaaaagtaatactttatccaagtcttctaaaactaaacttgtgaccattgctgccacttatc |
32126910 |
T |
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| Q |
101 |
agattcatccatttttaatgcacatgtaatgtaatatagctgccaaaatctttgagttacaaggataatttgctgtattttcacacgccaaagcatcatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32126911 |
agattcatccatttttaatgcacatgtaatgtaatat-----------------agttacaaggataatttgctgtattttcacacgccaaagcatcaag |
32126993 |
T |
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| Q |
201 |
cagatgttggtgtatgtaatct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
32126994 |
cagatgttggtgtatgtaatct |
32127015 |
T |
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Back To:
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Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 41412168 - 41412338
Alignment:
| Q |
51 |
tttatccaagtcttctaaaactaaacttgtgaccattgctgccacttttcagattcatccatttttaatgcacatgtaatgtaatatagctgccaaaatc |
150 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||| ||| ||| || |||||| |||||| ||||||||||||||||||||||||||| |
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| T |
41412168 |
tttatccaagtcttctaaaatgaaacttgtgatcattgctgccacttatcaaattgattcatttt-aatgcatatgtaatgtaatatagctgccaaaatc |
41412266 |
T |
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| Q |
151 |
tttgagttacaaggataatttgctgtattttcacacgccaaagcatcatgcagatgttggtgtatgtaatct |
222 |
Q |
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||||| ||||| || ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
41412267 |
tttgaattacaggggtaatttgttgtattttcacaagccaaagcatcgtgcagatgttggtgtatgtaatct |
41412338 |
T |
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