View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_139 (Length: 237)
Name: NF3223_low_139
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_139 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25033246 - 25033466
Alignment:
| Q |
1 |
tctcaagggaagggggacttgataattaggagttcatccccgaggtatgtatagctagcctaaccaagaattgttccaaatcgagctcgttaaccacttg |
100 |
Q |
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| T |
25033246 |
tctcaagggaagggggacttgataattaggagttcatccgcgaggtatgtatagctagcctaaccaagaattgttccaaattgagcttgttaaccacttg |
25033345 |
T |
|
| Q |
101 |
agttcaatcacttgatttaataagggactatttttattctatatataaaaaatcgtgtagtttaaagtgcatttcctaccttataagggactactttttt |
200 |
Q |
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| T |
25033346 |
agttcaatcacttggtttaataagggactatttttattctgtatataaaaaatcgtgtactttaaagtgcatttcctaccttataagggactactttttt |
25033445 |
T |
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| Q |
201 |
agtccgaatgaaactagaaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
25033446 |
agtccgaatgaaactagaaat |
25033466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 35245751 - 35245780
Alignment:
| Q |
90 |
ttaaccacttgagttcaatcacttgattta |
119 |
Q |
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| T |
35245751 |
ttaaccacttgagttcaatcacttgattta |
35245780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 56576413 - 56576377
Alignment:
| Q |
83 |
gagctcgttaaccacttgagttcaatcacttgattta |
119 |
Q |
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| T |
56576413 |
gagctcattaaccacttgagttcaatcacttggttta |
56576377 |
T |
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