View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_142 (Length: 236)
Name: NF3223_low_142
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_142 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 41042504 - 41042285
Alignment:
| Q |
16 |
atcaagatactttgctatcatcaaagggacgtcaatactttaaaaattgttatattcaaggtgaagatgacttcatttttggggaaggtcaatcttattt |
115 |
Q |
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| T |
41042504 |
atcaagatactttgctatcatcaaagggacgtcaatactttaaaaattgttatattcaaggtgaagatgacttcatttttggggaaggtcaatcttattt |
41042405 |
T |
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| Q |
116 |
tgaggtaagannnnnnnnnnnctttctaccaacattatcttaaggaaaggagctctaaaacgactagactagtatgcggtttaatagaagatgggtaaag |
215 |
Q |
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| T |
41042404 |
tgaggtaagacttttttttttc-ttctaccaacattatcttaaggaaaggagctctaaaacgactagactagtatgtggtttaatagaagatgggtaaag |
41042306 |
T |
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| Q |
216 |
tttgaaccaaatttttcaatc |
236 |
Q |
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| T |
41042305 |
tttgaaccaaatttttcaatc |
41042285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 38301367 - 38301285
Alignment:
| Q |
41 |
gggacgtcaatactttaaaaattgttatattcaaggtgaagatgacttcatttttggggaaggtcaatcttattttgaggtaa |
123 |
Q |
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| T |
38301367 |
gggacgtcattattataaaaattgttatattcaaggtgaagttgatttcatttttggtgaagcccagtcttattttgaggtaa |
38301285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 38294423 - 38294346
Alignment:
| Q |
45 |
cgtcaatactttaaaaattgttatattcaaggtgaagatgacttcatttttggggaaggtcaatcttattttgaggta |
122 |
Q |
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| T |
38294423 |
cgtcactattttaagaattgttatattcagggtgaagttgacttcatttttggtgaagcccaatcttattttgaggta |
38294346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 38305828 - 38305758
Alignment:
| Q |
41 |
gggacgtcaatactttaaaaattgttatattcaaggtgaagatgacttcatttttggggaaggtcaatctt |
111 |
Q |
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| T |
38305828 |
gggacgtcattattttaagaattgttatattcagggtgacgttgactttatttttggtgaagctcaatctt |
38305758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 18744396 - 18744478
Alignment:
| Q |
41 |
gggacgtcaatactttaaaaattgttatattcaaggtgaagatgacttcatttttggggaaggtcaatcttattttgaggtaa |
123 |
Q |
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| T |
18744396 |
gggacgtcattactataagaattgttatattcaaggtgaagttgacttcatttttggtcaagcccaatcttattttgaggtaa |
18744478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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