View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_144 (Length: 234)
Name: NF3223_low_144
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_144 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 39581816 - 39581591
Alignment:
| Q |
1 |
tcaaagaacaaatggctatcatcatcatcagcttctatctttcannnnnnncctttgttcttgctctttcataaacccaaatcacacaaaaactcacttc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581816 |
tcaaagaacaaatggctatcaccatcatcagcttctatctttcatttttttcctttgttcttgctctttcataaacccaaatcacacaaaaactcacttc |
39581717 |
T |
|
| Q |
101 |
tccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataaca |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39581716 |
tccttcttctacctcttactcacatcaactattttatattctatgataaaaaatt--ctaaattccctcttcatcttctcaatcatcatcacacataaca |
39581619 |
T |
|
| Q |
201 |
accagcattccttcactcttcttctctc |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
39581618 |
gccagcattccttcactcttcttctctc |
39581591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 34387115 - 34387345
Alignment:
| Q |
1 |
tcaaagaacaaatggctatcatcatcatcagcttctatctttcannnnnnn--cctttgttcttgctctttcataaacccaaatcacacaaaaactcact |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34387115 |
tcaaagaacaaatggctatcatcatcatcagcttctatctttcatttttttttcctttgttcttgctctttcataaacccaaatcacacaaaaactcact |
34387214 |
T |
|
| Q |
99 |
tctccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaa-ttccctcttcatcttctcaatcatcatcacacata |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||| |||||||||||| |
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|
| T |
34387215 |
tctccttcttctacctcctactcacatcaactattttatattctatgataaaaaaaaccttaaatttctctcttcatcttctcaatcgtcatcacacata |
34387314 |
T |
|
| Q |
198 |
acaaccagcattccttcactcttcttctctc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
34387315 |
acaaccagcattccttcactcttcttctctc |
34387345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31182940 - 31183168
Alignment:
| Q |
1 |
tcaaagaacaaatggctatcatcatcatcagcttctatctttcannnnnnn-cctttgttcttgctctttcataaacccaaatcacacaaaaactcactt |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31182940 |
tcaaaaaacaaatggctatcatcatcatcaacttctatctttcattttttttcctttgttcttgctctttcataaacccaaatcacacaaaaactcactt |
31183039 |
T |
|
| Q |
100 |
ctccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31183040 |
ctccttcttctacctcctactcacatcaactatttcatattctatgataaaaaaaatcccgaattccctcttcatcttctcaatcatcatcacacataac |
31183139 |
T |
|
| Q |
200 |
aaccagcattccttcactcttcttctctc |
228 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
31183140 |
agacagcattccttcactcttcttctctc |
31183168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7314058 - 7313831
Alignment:
| Q |
1 |
tcaaagaacaaatggctatcatcatcatcagcttctatctttcannnnnnnccttt-gttcttgctctttcataaacccaaatcacacaaaaactcactt |
99 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
7314058 |
tcaaagtacaaatggttatcatcatcatcagcttttatctttcattttttttcttttgttcttgctctttcataaatccaaatcacacaaaaactcgctt |
7313959 |
T |
|
| Q |
100 |
ctccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7313958 |
ctccttcttctacctcctactcacatcaactattttatatcctatgatgaaaaaaa-cccaaattccctcttcatcttctcaatcatcatcacacataac |
7313860 |
T |
|
| Q |
200 |
aaccagcattccttcactcttcttctctc |
228 |
Q |
| |
|
| || ||||||||||||||||||||||| |
|
|
| T |
7313859 |
agtcaacattccttcactcttcttctctc |
7313831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 47508306 - 47508262
Alignment:
| Q |
156 |
ccccaaattccctcttcatcttctcaatcatcatcacacataaca |
200 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||||| |||| |
|
|
| T |
47508306 |
ccccaaattccatcttaatcttatcaatcatcatcacacaaaaca |
47508262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 29183264 - 29183084
Alignment:
| Q |
52 |
cctttgttcttgctctttcataaacccaaa-tcacacaaaaactcacttctccttcttctacctcctactcaca--tcaactattttatattctatgatn |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| || || |
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|
| T |
29183264 |
cctttgttcttgctctttcataaacccaaaatcacatcaaaactcacttttccttcttctacatcctactcacatctcaactattttatattccataata |
29183165 |
T |
|
| Q |
149 |
nnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactcttcttctctct |
229 |
Q |
| |
|
| |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
29183164 |
taaaaaaactcaaatttcctcttcatcttctcgatcatcatcacacataacaaccataattccttcactcttcttctctct |
29183084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 52143491 - 52143615
Alignment:
| Q |
102 |
ccttcttctacctcctactcacatcaactattttatattctatgatnnnnnnnnccccaaattccctcttcatcttctcaatcatcatcacacataacaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
52143491 |
ccttcttctacctcctactcacatcaactattttatattctatgataaaaaa--ccccaaattccctcttcatcttctcaatcataatcacacataacaa |
52143588 |
T |
|
| Q |
202 |
ccagcattccttcactcttcttctctc |
228 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
52143589 |
ctagcattccttcactcttcttctctc |
52143615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52143116 - 52143159
Alignment:
| Q |
1 |
tcaaagaacaaatggctatcatcatcatcagcttctatctttca |
44 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52143116 |
tcaaagaacaaatggctattatcatcatcagcttctatctttca |
52143159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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