View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_147 (Length: 232)
Name: NF3223_low_147
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_147 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 9721503 - 9721714
Alignment:
| Q |
11 |
gtgagatgaagtggtggagtttttgttcctgttctctctggtgaataatgcattggtggagggctcatgaataatggcaactttggtatctttttgccat |
110 |
Q |
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| T |
9721503 |
gtgatatgaagtggtggagtttttgttcctgatctctctggtgaataatgcattggtggagggctcatgaataatggcaactttggtatctttttgccat |
9721602 |
T |
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| Q |
111 |
tttcttcctcacaagcttccatcaatactctctttgtattcaatctaggtcttaggatttttggttacat---------aataatgtaatgtggcaatgt |
201 |
Q |
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| T |
9721603 |
tttcttcctcacaagcttccatcaatactctctttgtattcaatctaggtcttaggatttttggttacatatagtggaaaataatgtaatgtggcaatgt |
9721702 |
T |
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| Q |
202 |
tgaagagattag |
213 |
Q |
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| T |
9721703 |
tgaagagattag |
9721714 |
T |
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