View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_154 (Length: 227)
Name: NF3223_low_154
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_154 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 30319385 - 30319605
Alignment:
| Q |
7 |
atcagctaacaaacagtcaaaccttaaagattcttcagatggttccaatgattcattgatccagtcagatgggtcacaaggagaaaatcttccagaaatt |
106 |
Q |
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| T |
30319385 |
atcagctaacaaacagtcaaaccttaaagattcttcagatggttccaatgattcattgatccagtcagatgggtcacaaggagaaaatcttccagaaatt |
30319484 |
T |
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| Q |
107 |
cccagaaaggctcgtcggaagaagtcgaaagataaagaaaattcaggtggtggatcatcatccaaattgagatccaaagcacaacaatcatcagatccta |
206 |
Q |
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| T |
30319485 |
cccagaaaggctcgtcggaagaagtcaaaagataaagaaaattcaggtggtggatcatcatccaaattgagatccaaagcacaacaatcatcagatccta |
30319584 |
T |
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| Q |
207 |
atatggagtatgaatctccat |
227 |
Q |
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| T |
30319585 |
atttggagtatgaatctccat |
30319605 |
T |
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