View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_155 (Length: 227)
Name: NF3223_low_155
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_155 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 6214762 - 6214982
Alignment:
| Q |
7 |
tatagtatagtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcag |
106 |
Q |
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| T |
6214762 |
tatagtatagtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcag |
6214861 |
T |
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| Q |
107 |
cacaagggtcgacattactgacctgcaaatttcatttaagaagaattttgtaattaatttcttatattcactattcagtaaactttattgtttattttta |
206 |
Q |
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| T |
6214862 |
cacaagggtcgacattactgacctgcaaatttcatttaagaagaattttgtaattaatttcttatattcactattcagtaaactttattgtttaatttta |
6214961 |
T |
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| Q |
207 |
tccaacactttaaatttaatc |
227 |
Q |
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| T |
6214962 |
tccaacactttaaatttaatc |
6214982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 6207111 - 6207257
Alignment:
| Q |
16 |
gtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagggt |
115 |
Q |
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| T |
6207111 |
gtgtacctgcaatgagaccattttatgggtttaacatgaagagccttttgaacttctgggagatttaaataggcagcggtataatcttcagcacaagggt |
6207210 |
T |
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| Q |
116 |
cgacattactgacctgcaaatttcatttaagaagaattttgtaattaa |
163 |
Q |
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| T |
6207211 |
cgatattactgacctgcaaatttcatttaagaag-attttgtaattaa |
6207257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 6177299 - 6177463
Alignment:
| Q |
14 |
tagtgtacctgcaaggagaccattttgtgcgtttaacatgaagagccttttgaacttctgggagatttaaataggtagtggtataatcttcagcacaagg |
113 |
Q |
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| T |
6177299 |
tagtgtacctgcaagaagaccattttgtgggtttaacatgaagagcctcttgaactttaggtaggtttaaataagcattagtataatcttcagaacaagg |
6177398 |
T |
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| Q |
114 |
gtcgacattactgacctgcaa-------atttcatttaagaagaattttgtaattaatttcttat |
171 |
Q |
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| T |
6177399 |
gtcaaaatcactaccctgcaatgttgatatttcatttaagaagcattttgcaattaatttcttat |
6177463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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