View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_16 (Length: 483)
Name: NF3223_low_16
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 36 - 464
Target Start/End: Original strand, 4195125 - 4195553
Alignment:
| Q |
36 |
tacacaatggtaacacaaactgaaccgttgctaaaaccaacctacatttcattgcaagaacttcaaaaacacaacactcgcggcgatgcatggatctcca |
135 |
Q |
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| T |
4195125 |
tacacaatggtaacacaaactgaaccgttgctaaaaccaacctacatttcattgcaagaacttcaaaaacacaacactcgcggcgatgcatggatctcca |
4195224 |
T |
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| Q |
136 |
ttgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcgagcttcctctcctcaacctcgccggccaagatgtcaccgatgcatt |
235 |
Q |
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| T |
4195225 |
ttgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcgagcttcctctcctcaacctcgccggccaagatgtcaccgatgcatt |
4195324 |
T |
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| Q |
236 |
cctcgctttccaccctccatccgcttacaaacacctccaaaactttgccactggcagttacctacgtgactacgtcgtctctgacgtctcacgtgactat |
335 |
Q |
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| T |
4195325 |
cctcgctttccaccctccatccgcttacaaacacctccaaaactttgccactggcagttacctacgtgactacgtcgtctctgacgtctcacgtgactat |
4195424 |
T |
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| Q |
336 |
cgtgcccttttctccgaactaaccaaactgggtttgttcgaagagaaaggacacggtgttttagttttactgtccattatttctgttatgttctttgtca |
435 |
Q |
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| T |
4195425 |
cgtgcccttttctccgaactaaccaaactgggtttgttcgaagagaaaggacacggtgttttacttttactgtccattatttctgttatgttctttgtca |
4195524 |
T |
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| Q |
436 |
gtgtttatggtgttttgttttgtgatagc |
464 |
Q |
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| T |
4195525 |
gtgtttatggtgttttgttttgtgatagc |
4195553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 4186190 - 4186310
Alignment:
| Q |
133 |
ccattgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcgagcttcctctcctcaacctcgccggccaagatgtcaccgatgc |
232 |
Q |
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| T |
4186190 |
ccattgacggcaagatatacgacgtctctaaatgggccaaccaccatcccggtggcgaattccctctaatcagccttgccggccaagaggttactgaagc |
4186289 |
T |
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| Q |
233 |
attcctcgctttccaccctcc |
253 |
Q |
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|||||| |||||||||||||| |
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| T |
4186290 |
attccttgctttccaccctcc |
4186310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 4186137 - 4186180
Alignment:
| Q |
68 |
aaaaccaacctacatttcattgcaagaacttcaaaaacacaaca |
111 |
Q |
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| T |
4186137 |
aaaaccaacctacatttcactgcaagaactccaaaaacacaaca |
4186180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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