View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_18 (Length: 461)
Name: NF3223_low_18
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 52820449 - 52820026
Alignment:
| Q |
19 |
aataaaaaccaacttatttttgactcattaataaaaccaacttcattcctacacaacatacaatatttatttagaaccaaaaacatgatgcaataaagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52820449 |
aataaaaaccaacttatttttgactcattaataaaaccaacttcattcctacacaacatacaatatttatttagaaccaaaaacatgatgcaataaagaa |
52820350 |
T |
|
| Q |
119 |
aatcaacatgacagataatttgacgcgaacttcagaactggttaaggcctagtaagaattaacatgcttaggatacatatagctaaacttgcccttcttt |
218 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52820349 |
aatcaacatga----taatttgacgcgaatttcagaactggttaatgcctagtaagaattaacatgcttaggacacatatagctaaacttgcccttcttt |
52820254 |
T |
|
| Q |
219 |
tagtaagattttgtaacgnnnnnnnnnnaattctgtcattgttcatatttcactttgttataacacatgtgtgacttatgaattttaaatgattatggga |
318 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52820253 |
tagtaagattttgtatcgttttttttttaattctgtcattgttcatatttcactttgttataacacatgtgtgacttatgaattttaaatgattatggga |
52820154 |
T |
|
| Q |
319 |
taggtgctgttgttgaggtcaaatgcaaagctggaaggaacatcatcaaggcttacggtaaaactaagagtaatggaaagtataccatcacaattccaaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52820153 |
taggtgctgttgttgaggtcaaatgcaaagctggaaggaacatcatcaaggcttacggtaaaactaagagtaatggaaagtatgccatcacaattccaaa |
52820054 |
T |
|
| Q |
419 |
ctttaactatgtaaaatatggttctgtg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
52820053 |
ctttaactatgtaaaatatggttctgtg |
52820026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 442
Target Start/End: Original strand, 11890504 - 11890635
Alignment:
| Q |
311 |
ttatgggataggtgctgttgttgaggtcaaatgcaaagctggaaggaacatcatcaaggcttacggtaaaactaagagtaatggaaagtataccatcaca |
410 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||||| || || || |||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
11890504 |
ttatgggacaggtgctgttgttgaagtgacatgcaaagccgggagcaaaatcatcaaggcttacggtaaaactaagatcaatggaaagtatgccatcaca |
11890603 |
T |
|
| Q |
411 |
attccaaactttaactatgtaaaatatggttc |
442 |
Q |
| |
|
|| ||||| ||||||| ||||||||||| |
|
|
| T |
11890604 |
gttaaggactttgactatgtcaaatatggttc |
11890635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 442
Target Start/End: Original strand, 11881151 - 11881269
Alignment:
| Q |
324 |
gctgttgttgaggtcaaatgcaaagctggaaggaacatcatcaaggcttacggtaaaactaagagtaatggaaagtataccatcacaattccaaacttta |
423 |
Q |
| |
|
|||||||||||||| | ||||||||| || || || || |||||||||| || |||||||||| |||||||||||| |||||||| || ||||| |
|
|
| T |
11881151 |
gctgttgttgaggtgacatgcaaagccgggagcaaaattgtcaaggcttatggaaaaactaagaacaatggaaagtatgccatcacagttaaggactttg |
11881250 |
T |
|
| Q |
424 |
actatgtaaaatatggttc |
442 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
11881251 |
actatgtcaaatatggttc |
11881269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 442
Target Start/End: Original strand, 11903651 - 11903769
Alignment:
| Q |
324 |
gctgttgttgaggtcaaatgcaaagctggaaggaacatcatcaaggcttacggtaaaactaagagtaatggaaagtataccatcacaattccaaacttta |
423 |
Q |
| |
|
|||||||||||||| | ||||||||| || || || || |||||||||| || |||||||||| |||||||||||| |||||||| || ||||| |
|
|
| T |
11903651 |
gctgttgttgaggtgacatgcaaagccgggagcaaaattgtcaaggcttatggaaaaactaagaacaatggaaagtatgccatcacagttaaggactttg |
11903750 |
T |
|
| Q |
424 |
actatgtaaaatatggttc |
442 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
11903751 |
actatgtcaaatatggttc |
11903769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University