View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_19 (Length: 459)

Name: NF3223_low_19
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_19
NF3223_low_19
[»] chr4 (10 HSPs)
chr4 (19-441)||(53472522-53472943)
chr4 (38-208)||(53469652-53469823)
chr4 (35-166)||(27272572-27272705)
chr4 (69-208)||(32015122-32015262)
chr4 (24-177)||(10395953-10396107)
chr4 (29-180)||(50887389-50887540)
chr4 (122-208)||(29235206-29235291)
chr4 (123-208)||(9010892-9010977)
chr4 (29-161)||(21206356-21206491)
chr4 (38-206)||(13816904-13817073)
[»] chr2 (7 HSPs)
chr2 (38-208)||(8761171-8761343)
chr2 (77-208)||(37965518-37965651)
chr2 (87-208)||(10128460-10128582)
chr2 (25-155)||(25550091-25550221)
chr2 (19-83)||(37965259-37965323)
chr2 (166-208)||(15140727-15140769)
chr2 (119-196)||(15140779-15140856)
[»] chr3 (5 HSPs)
chr3 (19-208)||(30046377-30046568)
chr3 (29-180)||(25889611-25889763)
chr3 (92-208)||(31141363-31141480)
chr3 (141-178)||(25578999-25579036)
chr3 (52-163)||(37133784-37133896)
[»] chr7 (10 HSPs)
chr7 (34-177)||(7961767-7961911)
chr7 (29-180)||(11269944-11270096)
chr7 (120-196)||(1103129-1103205)
chr7 (24-196)||(1716614-1716787)
chr7 (34-116)||(36207996-36208078)
chr7 (146-208)||(1345068-1345129)
chr7 (158-207)||(1103078-1103127)
chr7 (38-82)||(11269802-11269846)
chr7 (44-98)||(11280342-11280396)
chr7 (24-64)||(1345214-1345254)
[»] chr1 (6 HSPs)
chr1 (49-177)||(22827037-22827166)
chr1 (49-177)||(22840959-22841088)
chr1 (37-208)||(24284782-24284954)
chr1 (38-118)||(20260944-20261024)
chr1 (69-208)||(24272707-24272846)
chr1 (49-133)||(22826642-22826727)
[»] chr6 (12 HSPs)
chr6 (38-208)||(14721668-14721838)
chr6 (49-177)||(13557985-13558114)
chr6 (19-167)||(16910077-16910225)
chr6 (36-177)||(2921839-2921981)
chr6 (34-178)||(27340600-27340743)
chr6 (34-178)||(27401340-27401483)
chr6 (29-153)||(13555994-13556119)
chr6 (38-180)||(11678827-11678966)
chr6 (49-174)||(2923168-2923295)
chr6 (50-156)||(11677133-11677240)
chr6 (72-197)||(22880002-22880128)
chr6 (72-197)||(22898117-22898243)
[»] chr5 (4 HSPs)
chr5 (45-180)||(19670657-19670793)
chr5 (52-180)||(32795543-32795672)
chr5 (67-161)||(26896586-26896681)
chr5 (104-180)||(32796359-32796436)
[»] chr8 (2 HSPs)
chr8 (71-195)||(33897182-33897307)
chr8 (49-130)||(42001905-42001987)
[»] scaffold0007 (1 HSPs)
scaffold0007 (151-208)||(260473-260530)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 53472522 - 53472943
Alignment:
Q  19 gaattcactataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||    
T  53472522 gaattcactataatcgataattacagatactgaatagtagaggtaacgctagctatagcaaaacccactaaccattggtgcatgaaatactaacacacaa 53472621  T
Q  119 acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaatacttgggag 218  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||    
T  53472622 acttttatttatatggcaag-tctttgcatatttcttcgtattatccgatgtggaacattttcccaacactaattcaaggcatatttcaatactttggag 53472720  T
Q  219 tgtattagacttggaagaaaccattcgaatttaagtagaaaaaattgtgacgaacttgagttaagttttgaaccgattaaatttttataaagtgagtttt 318  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53472721 tgtataaaacttggaagaaaccattcgaatttaagtagaaaaaattgtgacgaacttgaattaagttttgaaccgattaaatttttataaagtgagtttt 53472820  T
Q  319 gaactgaacaatagtgtacacggacagtgactgttgtcatgtactttaaaaacgtgaatgtgggttgatatggtcggccataatttcaagagtttataga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53472821 gaactgaacaatagtgtacacggacagtgactgttgtcatgtactttaaaaacgtgaatgtgggttgatatggtcggccataatttcaagagtttataga 53472920  T
Q  419 gttcaacaagggtggtatgttag 441  Q
    |||||||||||||||||||||||    
T  53472921 gttcaacaagggtggtatgttag 53472943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 53469652 - 53469823
Alignment:
Q  38 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggca 136  Q
    ||||||||||||||||| || |||||||  | ||||||  |||| ||| |||| |||| | || |||||||||| |||||| ||||||||||||||| |     
T  53469652 attacagatactgaataatataggtaacattggctatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgacc 53469751  T
Q  137 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    || ||||||||||||||||| ||||||| ||||| | ||||||| |||||| ||||| ||| ||||||||||    
T  53469752 aagtctttgcatatttcttcatattatctgatgtagaacattttcccaacattaattaaaggcatatttcaa 53469823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 27272705 - 27272572
Alignment:
Q  35 ataattacagatactgaatagtagaggtaacgctagctataacaaaa-cccattaaccattggtgcatgaaatactaatacacaa-acttttatttatat 132  Q
    ||||||||| ||  ||||||||||| |||| |||||||||| ||||| |||| |||| ||||||||| |||||||||| |||||| ||||||||||||||    
T  27272705 ataattacaaattttgaatagtagaagtaatgctagctatagcaaaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatat 27272606  T
Q  133 ggcaaaatctttgcatatttcttcgtattatccg 166  Q
    | | ||| |||||||||||||||| |||||||||    
T  27272605 gaccaaacctttgcatatttcttcatattatccg 27272572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 32015262 - 32015122
Alignment:
Q  69 agctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccga 167  Q
    ||||||| ||||||||| |||| ||||||||| |||||||||| ||||||| | ||||||||| | || || ||||||||||| ||||| ||||||   |    
T  32015262 agctatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctattatttta 32015163  T
Q  168 tgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    |||| ||| ||||| ||||||||||||||||||||||||||    
T  32015162 tgtgagacttttttacaacactaattcaagacatatttcaa 32015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 10396107 - 10395953
Alignment:
Q  24 cactataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-actt 122  Q
    |||||||||||||||| ||||||||||||||||||| | ||| | | ||||| || |||||| |||| |||| |||| |||||||||| ||||||  |||    
T  10396107 cactataatcgataatcacagatactgaatagtagaaggaacaccatctatagcataacccactaactattgatgcaagaaatactaacacacaaggctt 10396008  T
Q  123 ttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacat 177  Q
    |||||||||||||  | ||||||||||||||||| | || || |||||| |||||    
T  10396007 ttatttatatggccgagtctttgcatatttcttcatcttctctgatgtgagacat 10395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 50887389 - 50887540
Alignment:
Q  29 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 127  Q
    |||| |||||||||| ||||| ||||||||||||||  ||||||||| ||||||||| |||| ||| ||| | | || || ||  ||||| || ||||||    
T  50887389 taattgataattacatatactaaatagtagaggtaatactagctatagcaaaacccactaactattagtgtaagcaaaaccaacgcacaagacatttatt 50887488  T
Q  128 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 180  Q
    |||||||| ||  |||||||||||| ||| |||||| ||||| ||||||||||    
T  50887489 tatatggccaagcctttgcatattt-ttcatattattcgatgcgggacatttt 50887540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 29235206 - 29235291
Alignment:
Q  122 tttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    |||||||||||||| || ||||||||||||| ||| ||| ||||||||||||| ||||| |||||| |||||||||  |||||||||    
T  29235206 tttatttatatggccaagtctttgcatattttttcatataatccgatgtgggatattttcccaaca-taattcaaggaatatttcaa 29235291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 9010892 - 9010977
Alignment:
Q  123 ttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    ||||||||||||| || || | |||||||||||| ||| |||||||||||||||| || | ||||||||||| || ||||||||||    
T  9010892 ttatttatatggccaagtcatagcatatttcttcatatcatccgatgtgggacatattcctaacactaattccaggcatatttcaa 9010977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 21206491 - 21206356
Alignment:
Q  29 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaa-cccattaaccattggtgca-tgaaatactaatacacaaa-ctttta 125  Q
    |||| |||||||||| ||  |||||| |||| |||| |||| ||||||||||| |||| |||| ||||||| | | |||||||||||||||   ||||||    
T  21206491 taattgataattacaaattttgaataatagaagtaatgctaactataacaaaaacccactaactattggtgtaataaaatactaatacacatggctttta 21206392  T
Q  126 tttatatggcaaaatctttgcatatttcttcgtatt 161  Q
    |||||||| | ||  ||||| |||||||||||||||    
T  21206391 tttatatgaccaagcctttgtatatttcttcgtatt 21206356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 13817073 - 13816904
Alignment:
Q  38 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaact-tttatttatatggca 136  Q
    |||||| ||||||||||| || || ||  ||||||||  |||||| || |||| ||| || || |||||| ||| ||| ||  | |||||||||||| |     
T  13817073 attacaaatactgaatagcagtggcaatactagctatcgcaaaactcactaactatttgtacaagaaataataacacataaggtctttatttatatgacc 13816974  T
Q  137 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttc 206  Q
    || |||| |||||||||||| |||| | ||||||| ||| |||| |||||| ||||||||  ||||||||    
T  13816973 aagtcttcgcatatttcttcatattcttcgatgtgagactttttcccaacattaattcaatgcatatttc 13816904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 8761171 - 8761343
Alignment:
Q  38 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatg-gc 135  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| ||||||||| |||||||||| |||||| |||||||||||||||  |    
T  8761171 attacagatactgaatagtagagataatgctagctataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgacc 8761270  T
Q  136 aaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    ||| | ||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  8761271 aaagtatttgcatatttcttcatattatctgatgtgggacattttcccaacacaaattcaagacatatttcaa 8761343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 37965518 - 37965651
Alignment:
Q  77 caaaacccattaaccattggtgcatgaaatactaatacacaaa--cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtggga 174  Q
    |||||||||||||| ||||||||| |||||||||| |||||||  |||||||||||||  | || ||||||||||||||||| |||||||||||||| ||    
T  37965518 caaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtgaga 37965617  T
Q  175 catttttccaacactaattcaagacatatttcaa 208  Q
    |||||| |||||||||||||||| ||||||||||    
T  37965618 cattttcccaacactaattcaaggcatatttcaa 37965651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 10128582 - 10128460
Alignment:
Q  87 taaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaa 185  Q
    |||| ||||||||| |||||||||| |||||| ||||||||||||||| | || ||||| ||||||||||| |||| |||||||||| | ||||||||||    
T  10128582 taactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtggaatatttttccaa 10128483  T
Q  186 cactaattcaagacatatttcaa 208  Q
    |||||||||| ||||||||||||    
T  10128482 cactaattcaggacatatttcaa 10128460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 25550221 - 25550091
Alignment:
Q  25 actataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttt 123  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||  |||| ||| |||| ||| || || |||||||| | |||||| |||||    
T  25550221 actataatcgataattacagatactgaatagtaaaggtaactccagctataggaaaatccactaactattagtccaagaaatact-acacacaagacttt 25550123  T
Q  124 tatttatatggcaaaatctttgcatatttctt 155  Q
    |||||||||||| |||||||| ||||||||||    
T  25550122 tatttatatggccaaatctttacatatttctt 25550091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 37965259 - 37965323
Alignment:
Q  19 gaattcactataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||    
T  37965259 gaattcactataatcgataattacagatactgaatagtagaggtaacgttacctatagcaaaacc 37965323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 15140769 - 15140727
Alignment:
Q  166 gatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15140769 gatgtgggacatttttccaacactaattcaagacatatttcaa 15140727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 15140856 - 15140779
Alignment:
Q  119 acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 196  Q
    ||||||||||||||| | |||||||| ||||||||||| | ||| ||||||||||||||  | |||||||||||||||    
T  15140856 acttttatttatatgaccaaatctttacatatttcttcattttaaccgatgtgggacataatcccaacactaattcaa 15140779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 30046568 - 30046377
Alignment:
Q  19 gaattcactataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa 118  Q
    ||||||| | |||||||||||| || ||| ||||||||||||||||||||||||||| ||||||| | |||| ||| || || |||||||||| ||||||    
T  30046568 gaattcaatgtaatcgataattgcatatattgaatagtagaggtaacgctagctatagcaaaaccgactaactatt-gtacaagaaatactaacacacaa 30046470  T
Q  119 a-cttttatttatatggcaaaatctttgcata--tttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    | |||||||||||||||  || ||||||||||  ||| ||| ||||||||||| || |||||||| |||||| ||||||||| ||||||||||    
T  30046469 agcttttatttatatggtcaagtctttgcatattttttttcatattatccgatatgagacattttcccaacattaattcaaggcatatttcaa 30046377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 25889763 - 25889611
Alignment:
Q  29 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 127  Q
    |||| |||||||||| | ||| |||| ||||||||  |||||||||| ||||||||| |||| ||||||||| |||||||||| | |||| |||||||||    
T  25889763 taattgataattacaaagactaaataatagaggtactgctagctatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatt 25889664  T
Q  128 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 180  Q
    |||||| | ||| |||||||||  ||||| | |||||||||||||||||||||    
T  25889663 tatatgaccaaacctttgcataactcttcatgttatccgatgtgggacatttt 25889611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 31141480 - 31141363
Alignment:
Q  92 attggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacacta 190  Q
    ||||||| | |||||||||| || ||| ||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||| |||||| |||| ||    
T  31141480 attggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctgatgtgagacttttttctaacaata 31141381  T
Q  191 attcaagacatatttcaa 208  Q
     || |||  |||||||||    
T  31141380 ttttaagttatatttcaa 31141363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 25578999 - 25579036
Alignment:
Q  141 ctttgcatatttcttcgtattatccgatgtgggacatt 178  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  25578999 ctttgcatatttcttcatattatccgatgtgagacatt 25579036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 37133784 - 37133896
Alignment:
Q  52 atagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatat 150  Q
    ||||||||| ||||  ||| |||| |||||  || |||| |||| || | ||||||||||||||||| ||||||||| ||| ||| ||||||| | ||||    
T  37133784 atagtagagttaacattagttatagcaaaattcactaactattgatgtaagaaatactaatacacaagacttttattcatacggctaaatcttcgtatat 37133883  T
Q  151 ttcttcgtattat 163  Q
    || ||| ||||||    
T  37133884 tttttcatattat 37133896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 7961911 - 7961767
Alignment:
Q  34 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatat 132  Q
    |||||||||| ||  ||||||||||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||||||  |||||||||||||    
T  7961911 gataattacaaattttgaatagtagaagtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatat 7961812  T
Q  133 ggcaaaatctttgcatatttcttcgtattatccgatgtgggacat 177  Q
    | | ||| |||||||||||||||| |||||| |||||||||||||    
T  7961811 gaccaaacctttgcatatttcttcatattatgcgatgtgggacat 7961767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 11270096 - 11269944
Alignment:
Q  29 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 127  Q
    |||| |||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||| |||||||||   |||||||| ||||||  ||||||||    
T  11270096 taattgataattacaaatactgaatagtagaggtaacactagttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatt 11269997  T
Q  128 tatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 180  Q
    |||||| | |||  |||  |||||||||| |||||||||||||||||||||||    
T  11269996 tatatgaccaaacttttttatatttcttcatattatccgatgtgggacatttt 11269944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 1103205 - 1103129
Alignment:
Q  120 cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 196  Q
    |||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  1103205 cttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttttccaacactaattcaa 1103129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 1716614 - 1716787
Alignment:
Q  24 cactataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-actt 122  Q
    ||||||||||||| || | | ||||||||||||||||||||  | |||||||| ||||| || |||| |||| |||| |||||| ||| |||||| || |    
T  1716614 cactataatcgattatcatatatactgaatagtagaggtaataccagctataaaaaaactcactaactattgatgcaagaaatattaacacacaagacct 1716713  T
Q  123 ttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaa 196  Q
    ||||||||||||  || ||||| ||||||| ||| |||| | ||||||| ||  |||||||||||||| |||||    
T  1716714 ttatttatatggtcaagtctttacatattttttcatattcttcgatgtgagaattttttccaacactatttcaa 1716787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 36208078 - 36207996
Alignment:
Q  34 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacac 116  Q
    |||||||| ||||||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |||||||||| ||||    
T  36208078 gataattagagatactaaatagtagagctaacgctagctatagcaaaacccactaactattggtgcaagaaatactaacacac 36207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 1345129 - 1345068
Alignment:
Q  146 catatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    ||||||||||| |||| | ||||||| ||| |||||| |||||||||||||||||||||||||    
T  1345129 catatttcttcttattcttcgatgtgagac-tttttctaacactaattcaagacatatttcaa 1345068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 1103127 - 1103078
Alignment:
Q  158 tattatccgatgtgggacatttttccaacactaattcaagacatatttca 207  Q
    ||||||| |||||| |||||||| |||||||||||||||| |||||||||    
T  1103127 tattatcagatgtgagacattttcccaacactaattcaaggcatatttca 1103078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 11269802 - 11269846
Alignment:
Q  38 attacagatactgaatagtagaggtaacgctagctataacaaaac 82  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||    
T  11269802 attacagatactaactagtagaggtaacgctagctatagcaaaac 11269846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 11280396 - 11280342
Alignment:
Q  44 gatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtg 98  Q
    |||||||  ||||||||||||||||||||||| ||||||| | |||| |||||||    
T  11280396 gatactgtctagtagaggtaacgctagctatagcaaaacctactaactattggtg 11280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 1345254 - 1345214
Alignment:
Q  24 cactataatcgataattacagatactgaatagtagaggtaa 64  Q
    ||||||||||||| |||||| ||||||||||||||| ||||    
T  1345254 cactataatcgatgattacatatactgaatagtagaagtaa 1345214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 22827037 - 22827166
Alignment:
Q  49 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgca 147  Q
    ||||||||||| |||| |||||||||||||||||||| |||| ||||||||| ||||||  || ||||||  |||||||||||||| | ||| |||||||    
T  22827037 tgaatagtagaagtaatgctagctataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaaacctttgca 22827136  T
Q  148 tatttcttcgtattatccgatgtgggacat 177  Q
    ||||||||| ||||||||||||||||||||    
T  22827137 tatttcttcatattatccgatgtgggacat 22827166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 22841088 - 22840959
Alignment:
Q  49 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgca 147  Q
    ||||||||||| |||| ||||||||||  |||||||| |||| ||||||||| |||||||||| ||||||  ||||||||| |||| | ||  |||||||    
T  22841088 tgaatagtagaagtaatgctagctatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaagcctttgca 22840989  T
Q  148 tatttcttcgtattatccgatgtgggacat 177  Q
    ||||||||| ||||||||||||||||||||    
T  22840988 tatttcttcatattatccgatgtgggacat 22840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 24284954 - 24284782
Alignment:
Q  37 aattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggc 135  Q
    ||||||||||||| |||||||||| |||  | |||||||  || | ||| | || ||||||||| |||||| ||| ||||||  | ||||||||||| ||    
T  24284954 aattacagatactaaatagtagagctaataccagctatagtaacatccactgactattggtgcaagaaatattaacacacaatgcctttatttatatagc 24284855  T
Q  136 aaaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
     |||| ||||||||||| ||| |||| || |||||||||| |||| |||| | ||||||||| ||||||||||    
T  24284854 caaatatttgcatatttgttcatattctctgatgtgggactttttcccaatattaattcaaggcatatttcaa 24284782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 20260944 - 20261024
Alignment:
Q  38 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa 118  Q
    |||||| |||||||||||||||||||||||||| |||| |||||  ||||| | |||| |||| |||||||||||||||||    
T  20260944 attacatatactgaatagtagaggtaacgctagttatagcaaaattcattagctattgatgcaagaaatactaatacacaa 20261024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 24272846 - 24272707
Alignment:
Q  69 agctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccga 167  Q
    |||||||  ||||| || |||| ||||||||| |||||||||| ||||||  | ||||| ||||| |  || ||||||||||||||||| || | | |||    
T  24272846 agctatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcatactctacga 24272747  T
Q  168 tgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    |||| ||  ||||||||||||||||||||||||||||||||    
T  24272746 tgtgagat-tttttccaacactaattcaagacatatttcaa 24272707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 22826642 - 22826727
Alignment:
Q  49 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatg 133  Q
    ||||||||||| |||| |||||||||| ||||| ||| |||| ||||||||| |||||||||| ||| ||  ||||||||||||||    
T  22826642 tgaatagtagaagtaatgctagctatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatg 22826727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 14721838 - 14721668
Alignment:
Q  38 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggca 136  Q
    ||||||||||| |||||||| ||||||    || ||||||||||||||||||| |||| |||| |||||||| ||| ||||  |||||||||||| |||     
T  14721838 attacagataccgaatagtataggtaatatcagatataacaaaacccattaactattgctgcaagaaatacttataaacaaggcttttatttata-ggcc 14721740  T
Q  137 aaatctttgcatatttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    |||||||||||||||||||  |||| |||||||||||||||||| |||||| ||||||| | ||||| ||||    
T  14721739 aaatctttgcatatttctttctattctccgatgtgggacattttcccaacattaattcatggcatatgtcaa 14721668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 49 - 177
Target Start/End: Original strand, 13557985 - 13558114
Alignment:
Q  49 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgca 147  Q
    ||||||||||| |||| |||||| ||| ||||| ||| |||| |||||||||||||||||||| ||||||  |||||||||||||| | ||  |||||||    
T  13557985 tgaatagtagaagtaatgctagcaatagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaagcctttgca 13558084  T
Q  148 tatttcttcgtattatccgatgtgggacat 177  Q
    ||||||||| ||||||||||||||||||||    
T  13558085 tatttcttcatattatccgatgtgggacat 13558114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 16910077 - 16910225
Alignment:
Q  19 gaattcactataatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||| ||  ||| ||||| |||  ||||||||| ||||||    
T  16910077 gaattcactataatcgataattacagatactgaatagtaaatgt-acgctagctatagcaaaacacacaaactattggcgcaacaaatactaacacacaa 16910175  T
Q  119 -acttttatttatatggcaaaatctttgcatatttcttcgtattatccga 167  Q
     |||||||||||||  || || |||||||||||| |||| ||||||||||    
T  16910176 tacttttatttataatgccaagtctttgcatattccttcatattatccga 16910225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 2921839 - 2921981
Alignment:
Q  36 taattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatgg 134  Q
    |||||||| ||  |||||| |||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||| || ||||||||||||||      
T  2921839 taattacaaattttgaatattagacgtaatgctagctatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatatta 2921938  T
Q  135 caaaatctttgcatatttcttcgtattatccgatgtgggacat 177  Q
    | || || |||||||||||||| |||||||||||||| |||||    
T  2921939 ccaagtcattgcatatttcttcatattatccgatgtgagacat 2921981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 27340600 - 27340743
Alignment:
Q  34 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaacttttatttatatg 133  Q
    |||||||||| ||  ||||||||||| |||| ||||| |||| ||||||||| |||| |||||| || || ||||||| |||||   |||||||||||||    
T  27340600 gataattacaaattttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt-ttttatttatatg 27340698  T
Q  134 gcaaaatctttgcatatttcttcgtattatccgatgtgggacatt 178  Q
     | ||  |||||||||||||||| |||||||||||||||||||||    
T  27340699 accaagcctttgcatatttcttcatattatccgatgtgggacatt 27340743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 27401340 - 27401483
Alignment:
Q  34 gataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaacttttatttatatg 133  Q
    |||||||||| ||  ||||||||||| |||| ||||| |||| ||||||||| |||| |||||| || || ||||||| |||||   |||||||||||||    
T  27401340 gataattacaaattttgaatagtagaagtaatgctagttatagcaaaacccactaactattggtacaagatatactaacacacagt-ttttatttatatg 27401438  T
Q  134 gcaaaatctttgcatatttcttcgtattatccgatgtgggacatt 178  Q
     | ||  |||||||||||||||| |||||||||||||||||||||    
T  27401439 accaagcctttgcatatttcttcatattatccgatgtgggacatt 27401483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 13555994 - 13556119
Alignment:
Q  29 taatcgataattacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatt 127  Q
    |||| |||||||||| ||  ||||||||||| |||| |||||||||| ||||||||| |||| ||||||||| |||||||||| ||||||  ||||||||    
T  13555994 taattgataattacaaattttgaatagtagaagtaatgctagctatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatt 13556093  T
Q  128 tatatggcaaaatctttgcatatttc 153  Q
    |||||| | ||  |||||||||||||    
T  13556094 tatatgaccaagcctttgcatatttc 13556119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 180
Target Start/End: Complemental strand, 11678966 - 11678827
Alignment:
Q  38 attacagatactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggca 136  Q
    |||||| |||||||||||||||||||| |||| ||||| ||||| ||| ||    ||||||   |||||||||| |||||| | ||||||||| ||| |     
T  11678966 attacaaatactgaatagtagaggtaatgctaactatagcaaaatccacta----ttggtgttagaaatactaacacacaagagttttatttacatgacc 11678871  T
Q  137 aaatctttgcatatttcttcgtattatccgatgtgggacatttt 180  Q
    ||  |||||||||||||||| |||||||||||||||||||||||    
T  11678870 aagcctttgcatatttcttcatattatccgatgtgggacatttt 11678827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 2923168 - 2923295
Alignment:
Q  49 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatcttt-gc 146  Q
    ||||||||||| ||||   |||||||||||| ||||| |||| ||| ||||| ||| |||||| |||||| ||||||||||||||| | ||  |||| ||    
T  2923168 tgaatagtagaagtaatattagctataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaagccttttgc 2923267  T
Q  147 atatttcttcgtattatccgatgtggga 174  Q
    |||||||||| |||||||||||||||||    
T  2923268 atatttcttcatattatccgatgtggga 2923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 11677240 - 11677133
Alignment:
Q  50 gaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcat 148  Q
    ||||||||||||||| ||||||||||  |||||||  |||| |||||||   |||||||||| |||||| | |||||||||||||   ||  ||||||||    
T  11677240 gaatagtagaggtaatgctagctataggaaaacccgctaactattggtgttagaaatactaacacacaagagttttatttatatgatcaatcctttgcat 11677141  T
Q  149 atttcttc 156  Q
    ||||||||    
T  11677140 atttcttc 11677133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 22880002 - 22880128
Alignment:
Q  72 tataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgt 170  Q
    |||| ||||||||| |||  ||||||||| |||||| ||| ||||||| | |||||||||||| | || | |||  |||||||||  |||| || | |||    
T  22880002 tatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 22880101  T
Q  171 gggacatttttccaacactaattcaag 197  Q
    | ||| |||||||||||||||||||||    
T  22880102 gtgacttttttccaacactaattcaag 22880128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 22898117 - 22898243
Alignment:
Q  72 tataacaaaacccattaaccattggtgcatgaaatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgt 170  Q
    |||| ||||||||| |||  ||||||||| |||||| ||| ||| ||| | |||||||||||| | || | |||  |||||||||  |||| || | |||    
T  22898117 tatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 22898216  T
Q  171 gggacatttttccaacactaattcaag 197  Q
    | ||| |||||||||||||||||||||    
T  22898217 gtgacttttttccaacactaattcaag 22898243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 19670793 - 19670657
Alignment:
Q  45 atactgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctt 143  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||| || | |||||||| ||||||  |||||||||||||| | ||  |||    
T  19670793 atactgaatagtagaggtaacgctagctatagcaaaacccactaactattggtacaagtaatactaacacacaaggcttttatttatatgactaagcctt 19670694  T
Q  144 tgcatatttcttcgtattatccgatgtgggacatttt 180  Q
    ||||||||||||| |||||||  ||||| ||||||||    
T  19670693 tgcatatttcttcatattatcttatgtgagacatttt 19670657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 180
Target Start/End: Original strand, 32795543 - 32795672
Alignment:
Q  52 atagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatat 150  Q
    ||||||||||||||| ||| |||| ||||||||| |||| |||||| || | |||||| | || ||| ||||||||| ||||| | || |||||||||||    
T  32795543 atagtagaggtaacgttagttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatat 32795642  T
Q  151 ttcttcgtattatccgatgtgggacatttt 180  Q
    |||||| |||||||||||||||||||||||    
T  32795643 ttcttcatattatccgatgtgggacatttt 32795672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 26896681 - 26896586
Alignment:
Q  67 ctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaaact-tttatttatatggcaaaatctttgcatatttcttcgtatt 161  Q
    ||||||||| |||||| ||||||| |||  |||| |||||||||| ||||||  | |||||||||||||| || ||||||||||||||||| ||||    
T  26896681 ctagctatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctatt 26896586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 32796359 - 32796436
Alignment:
Q  104 aatactaatacacaaa-cttttatttatatggcaaaatctttgcatatttcttcgtattatccgatgtgggacatttt 180  Q
    |||||||| ||||||  |||||||||||||| | ||  |||||||||||||||| ||||||||||| |||||||||||    
T  32796359 aatactaacacacaaggcttttatttatatgactaagcctttgcatatttcttcatattatccgatctgggacatttt 32796436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 33897307 - 33897182
Alignment:
Q  71 ctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttatatggcaaaatctttgcatatttcttcgtattatccgatg 169  Q
    ||||||||||||| | |||  ||||||| |  ||||||||| |||||| |||||||||||||| |  |||||||| ||||||||||| ||||||  |||     
T  33897307 ctataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatctttacatatttcttcctattatatgata 33897208  T
Q  170 tgggacatttttccaacactaattca 195  Q
    | ||||||||| ||||||||||||||    
T  33897207 ttggacattttcccaacactaattca 33897182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 42001987 - 42001905
Alignment:
Q  49 tgaatagtagaggtaacgctagctataacaaaacccattaaccattggtgcatgaaatactaatacacaa-acttttatttat 130  Q
    ||||||||||| |||| |||| ||||| ||||||| | |||| ||||||||| | | |||||| |||||| ||||||||||||    
T  42001987 tgaatagtagaagtaatgctacctatagcaaaacctactaactattggtgcaagtattactaacacacaagacttttatttat 42001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 260473 - 260530
Alignment:
Q  151 ttcttcgtattatccgatgtgggacatttttccaacactaattcaagacatatttcaa 208  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||| |||||||||||    
T  260473 ttcttcgtattaccctatgtaggacattttcccaacactaattcaaaacatatttcaa 260530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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