View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_2 (Length: 748)
Name: NF3223_low_2
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 443
Target Start/End: Original strand, 36521620 - 36522048
Alignment:
| Q |
15 |
atatgcctattctatctgcacaccaaacaagctttagagtttagttcaacattttaaataattttttctcagttcaataggacactttactaattgatga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521620 |
atatgcctattctatctgcacaccaaacaagctttagtgtttagttcaacattttaaataattttttctcagttcaataggacactttactaattgatga |
36521719 |
T |
|
| Q |
115 |
ctcgttgacacacttggatggattatgttaatatgtttttctgcaagatgcatgttaatagaatctgtcttataattatcaaatcactatcatcaaacca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521720 |
ctcgttgacacacttggatggattatgttaatatgtttttctgcaagatgcatgttaatagaatctgtcttataattatcaaatcactatcatcaaacca |
36521819 |
T |
|
| Q |
215 |
ccattattgaacattcaatgtatcaattagtgtatatcttgactatgctccaatgagaagaattatttgaattacaattaactttctttcatgacattat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521820 |
ccattattgaacattcaatgtatcaattagtgtatatcttgactatgctccaatgagaagaattatttgaattacaattaactttctttcatgacattat |
36521919 |
T |
|
| Q |
315 |
tagaatatttgnnnnnnncttcatgacacctattgagcaaatcattgacattttaataggagaaatagtactatagtatatcactttttctaacttctaa |
414 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36521920 |
tagaatatttgtttttttcttcatgacacctattgagcaaatcattgacattttaataggagaaatagtactatagtatatcactttttctaacttctaa |
36522019 |
T |
|
| Q |
415 |
ctaaccaaatggccattgaatagtgacca |
443 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36522020 |
ctaaccaaatggccattgaatagtgacca |
36522048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 514 - 737
Target Start/End: Original strand, 36522119 - 36522342
Alignment:
| Q |
514 |
caatcaacttaaagcttccatttattgctaacccttaacgtatcttccaatatatgttgacagattcccacttttttggtcctcaaatccctttacacat |
613 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36522119 |
caatcaacttaaagcttcaatttattgctaacccttaacgtatcttccaatatatgttgacatattcccacttttttggtcctcaaatccctttacacat |
36522218 |
T |
|
| Q |
614 |
tcaaataacgctattctaggaccaaaaagtacaagtatacatgatctttcacagcccactttacactaacttcaatgttaatagttccttcttaccaaag |
713 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36522219 |
tcaaataacgctattctaggaccaaaaagaacaagtatacatgatctttcacaacccactttacactaacttcaatgctaatagttccttcttaccaaaa |
36522318 |
T |
|
| Q |
714 |
cattggaaaaagcccatgatgatg |
737 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36522319 |
cattggaaaaagcccatgatgatg |
36522342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University