View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_20 (Length: 448)
Name: NF3223_low_20
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 1159385 - 1159299
Alignment:
| Q |
110 |
gtatgtaatgtgattgatacgcctcttaattaaagtaaggaaactctatgtaagtaagtactatactttccttattgttacattttt |
196 |
Q |
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| T |
1159385 |
gtatgtaatgtgattgatacgcctcttaattaaagtaaggaaactctatgtaagtaagtactatactttccttattgttacattttt |
1159299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 1159268 - 1159214
Alignment:
| Q |
192 |
tttttggcaactgaaagaaacattacagctttttc---tctatatgagtattata |
243 |
Q |
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| T |
1159268 |
tttttggcaactgaaagaaacattacagctttttctgatctatatgagtattata |
1159214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 1159461 - 1159407
Alignment:
| Q |
14 |
agagcaaatgtcattttcctaacca---aaaaataataatgtcattttcttggga |
65 |
Q |
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| T |
1159461 |
agagcaaatgtcattttcctaaccaaataataataataatgtcattttcttggga |
1159407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 411
Target Start/End: Complemental strand, 1159052 - 1159022
Alignment:
| Q |
381 |
taacactattttcactcttaacttttcattt |
411 |
Q |
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| T |
1159052 |
taacactattttcactcttaacttttcattt |
1159022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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