View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_23 (Length: 445)
Name: NF3223_low_23
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 2536278 - 2535860
Alignment:
| Q |
19 |
agagaatactgatgacttgatttctctgagacatctttttggagtcttcactcttcaccggtcagtttcgcatcttcctctgcctggttttcgtcatcag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2536278 |
agagaatactgatgacttgatttctctgagacatctttttgaagtcttcactcttcaccggtcagtttcgcgtcttcctctgcctggttttcgtcatcag |
2536179 |
T |
|
| Q |
119 |
aacccaccaccagcgatggccgtaattctcttcttagcacatttcgagtcagttctgcttgtgttgtattcgatggcacgctttgttccagatctggccg |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2536178 |
aacccaccaccagcaatggccgtaattctcttcttagcacatttcgagtcagttctgcttgtgttgtattcgatggcacgctttgttccagatctggccg |
2536079 |
T |
|
| Q |
219 |
gtaccagagtgaactgggcctatggcaggcttccatgggcttaaaagtgaggggtttgactttggcatcataattgaattagttttccacttgaagaaat |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2536078 |
gtaccggagtgaactgggcctatggcaggcttccatgggcttaaaagtgaggggtttgactttggcatcataattgaattagttttccacttgaagaaat |
2535979 |
T |
|
| Q |
319 |
atgtcactcacactcttagtataaatccccctccttacatattccaaaaaaccaaacaaaagctcaatcctcaaccccactgattaactcctcaactctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
2535978 |
atgtcactcacactcttagtataaatccccctccttacatattccaaaaaaccaaacaaaagctcactcctcaatcccactaattaactcctcaactctt |
2535879 |
T |
|
| Q |
419 |
cttcagctgtcttcatctc |
437 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2535878 |
cttcagctgtcttcatctc |
2535860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University