View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_26 (Length: 424)

Name: NF3223_low_26
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_26
NF3223_low_26
[»] chr3 (9 HSPs)
chr3 (11-319)||(22533270-22533578)
chr3 (11-319)||(42806812-42807120)
chr3 (11-319)||(29542910-29543217)
chr3 (56-319)||(6925216-6925479)
chr3 (37-217)||(53877430-53877610)
chr3 (319-406)||(38482079-38482166)
chr3 (12-164)||(9859267-9859419)
chr3 (96-189)||(6893591-6893684)
chr3 (97-179)||(28871942-28872024)
[»] chr8 (2 HSPs)
chr8 (11-319)||(7179553-7179861)
chr8 (129-215)||(41691571-41691657)
[»] chr7 (6 HSPs)
chr7 (21-319)||(38342232-38342530)
chr7 (11-317)||(40617257-40617563)
chr7 (88-317)||(37136893-37137122)
chr7 (111-257)||(11883761-11883906)
chr7 (97-317)||(27854150-27854371)
chr7 (99-191)||(35515519-35515611)
[»] chr4 (2 HSPs)
chr4 (31-319)||(54871361-54871649)
chr4 (91-195)||(18921304-18921408)
[»] chr5 (4 HSPs)
chr5 (97-278)||(7961753-7961934)
chr5 (97-317)||(32018593-32018813)
chr5 (99-179)||(32251598-32251678)
chr5 (146-212)||(19315617-19315683)
[»] chr2 (5 HSPs)
chr2 (23-272)||(842083-842326)
chr2 (97-317)||(24739087-24739307)
chr2 (120-228)||(40427557-40427665)
chr2 (118-212)||(12606236-12606330)
chr2 (91-164)||(1998296-1998369)
[»] chr6 (4 HSPs)
chr6 (236-317)||(32533798-32533879)
chr6 (97-164)||(32533673-32533740)
chr6 (146-212)||(12687562-12687628)
chr6 (145-189)||(5668022-5668066)
[»] chr1 (2 HSPs)
chr1 (97-317)||(12687458-12687679)
chr1 (96-194)||(5677358-5677456)
[»] scaffold0225 (1 HSPs)
scaffold0225 (100-194)||(5898-5992)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 22533578 - 22533270
Alignment:
Q  11 gaacctgtgcaatgagtgtattgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaat 110  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22533578 gaacctgggcaatgagtgtattgtaagcactttgaacagtataacaagaagaatgatccgcctgccatagccacctgtcgttttgatgaacctgtaaaat 22533479  T
Q  111 aacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccct 210  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22533478 aacattgtgaactaaaagcctaagctctactacagactcctcctcccacgcaaaaagcctacgtctccacctccacgcctcaccctcttctccccaccct 22533379  T
Q  211 aaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccg 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  22533378 aaagctctcattgatgccactgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaagacaattctcccaaccaaacattcg 22533279  T
Q  311 tccaaaata 319  Q
    |||||||||    
T  22533278 tccaaaata 22533270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 42806812 - 42807120
Alignment:
Q  11 gaacctgtgcaatgagtgtattgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaat 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||    
T  42806812 gaacctgggcaatgagtgtattgtaagcactctgaacagtataacaagaagaacgatctgcctgccatagccacctgtctttttgatgaacctgtaaaat 42806911  T
Q  111 aacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42806912 aacattgtgaagtaaaagcctaagctccactacagactcctcctaccacgcaaaaagcctacgtctccacctccacgcctcaccctcttctccccaccct 42807011  T
Q  211 aaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccg 310  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| | |||||||||    
T  42807012 aaagccctcatagatgccaccgtttccccctttagtaacgacaagtcatataatctactaaacctatcacgtaaagacaaatctcccacctaaacatccg 42807111  T
Q  311 tccaaaata 319  Q
    |||||||||    
T  42807112 tccaaaata 42807120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 29542910 - 29543217
Alignment:
Q  11 gaacctgtgcaatgagtgtattgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaat 110  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |    
T  29542910 gaacctgggcaatgagtgtattgtaagcactctgaactgtgtaacaagaagaatgatccgcctgccatagccacttgtcctcttgctgaacctgtaaagt 29543009  T
Q  111 aacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccct 210  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  29543010 aacattgtgaagtaaaagcctaagctccgctacagactcctcctcccacgcaaatagcctacgtctccacctccacgcctcaccctcttctccccaccct 29543109  T
Q  211 aaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccg 310  Q
    ||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| |||||    
T  29543110 aaatctctctttgttgccaccgttt-cccctttagtaacgacaactcatataatctactaaacctatcacgtaatgacaactctcccaaccaaatatccg 29543208  T
Q  311 tccaaaata 319  Q
    |||||||||    
T  29543209 tccaaaata 29543217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 319
Target Start/End: Complemental strand, 6925479 - 6925216
Alignment:
Q  56 aagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctc 155  Q
    ||||||||  ||| |||| ||| | |||| |||||||||| ||| ||||||||  |||||| |||||||||||| |||| ||| |||| |||||||||||    
T  6925479 aagaagaagaatcagccttccaaatccacatgtccttttgctgagcctgtaaagaaacattatgaagtaaaagcgtaagttccgctaccgactcctcctc 6925380  T
Q  156 ccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaaagctctcattgatgccaccgtttccccctttagtaacgacaac 255  Q
    |||||| || | ||||||  ||||| || ||||||||||| | ||  |||| ||||||||| |||| | |||||| | ||| ||||| | ||| || | |    
T  6925379 ccacgcgaacaacctacgcttccacttccacgcctcacccgcctcatcccaacctaaagctttcatcgttgccacagattctcccttaaataaagaaagc 6925280  T
Q  256 tcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccgtccaaaata 319  Q
    ||||| || ||||||||||||||||||||  |||| ||||||||||||| ||| ||||||||||    
T  6925279 tcatacaacctactaaacctatcacgtaacgacaactctcccaaccaaatatcagtccaaaata 6925216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 217
Target Start/End: Original strand, 53877430 - 53877610
Alignment:
Q  37 gcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaataacattgtgaagtaaaagcctaagct 136  Q
    ||||||||||| || ||| ||||||||  ||| |||| |||  ||||||||||||| || ||| ||||||||  ||||||||||||||||||||||||||    
T  53877430 gcactctgaactgtgtaagaagaagaagaatcagccttccaatgccacctgtccttctgctgagcctgtaaagaaacattgtgaagtaaaagcctaagct 53877529  T
Q  137 ccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaaagctc 217  Q
    |||| || ||||||||||||||||| || | || ||| ||||||||| |||||||||| || ||  |||| ||||||||||    
T  53877530 ccaccaccgactcctcctcccacgcgaacaaccgacgcctccacctccacgcctcaccatcctcatcccatcctaaagctc 53877610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 38482079 - 38482166
Alignment:
Q  319 ataagataatattgttctaaatacgatgaaactttagtctattagaagaggttagacttattaaatgcttgtttgaattagagtttgc 406  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  38482079 ataagataatattgttctaaatacaatgaaactttagtctattagaagaggttagatttattaaatgcttgtttggattaaagtttgc 38482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 9859267 - 9859419
Alignment:
Q  12 aacctgtgcaatgagtgtattgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaata 111  Q
    |||||| |||||||  |||||||| ||||| ||||| || |||||||||||| ||||||| | |||   |||  | |||||||  | || |||||||  |    
T  9859267 aacctgagcaatgaaagtattgtatgcactttgaactgtgtaacaagaagaaggatccgcgttccacttccaaatatcctttttgtaaatctgtaaagaa 9859366  T
Q  112 acattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaa 164  Q
    ||||| ||||||||||| ||||| ||| |||| ||||| ||||||||||||||    
T  9859367 acattttgaagtaaaagtctaagttcccctaccgactcttcctcccacgcaaa 9859419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 6893684 - 6893591
Alignment:
Q  96 atgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcc 189  Q
    ||||||||||||| | ||||| ||||||||||   |||||||  | || ||||||||||||||| |||| | |||||||||||||||| |||||    
T  6893684 atgaacctgtaaagtcacattttgaagtaaaataataagctcttccaccgactcctcctcccacacaaacaacctacgtctccacctccacgcc 6893591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 28871942 - 28872024
Alignment:
Q  97 tgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctcca 179  Q
    |||||||| ||| ||||||||| |||||||  ||||  |||| ||||  | ||||||||||||||||| ||||||||||||||    
T  28871942 tgaacctgaaaagtaacattgttaagtaaattcctacactcccctaccaaatcctcctcccacgcaaatagcctacgtctcca 28872024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 7179553 - 7179861
Alignment:
Q  11 gaacctgtgcaatgagtgtattgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaat 110  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||||||||   |||||| | |||  |||||||||||||||| ||||||||||||      
T  7179553 gaacctgggcaatgagcgtattgtaagcactctgaactgtgtaacaagaagaggaatccgcattccaatgccacctgtccttttgctgaacctgtaaaga 7179652  T
Q  111 aacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccct 210  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||||||||| | | |||||| ||||||||| | |||||| |||||||| ||||||||    
T  7179653 aacattttgaagtaaaagcctaagctccgctaccgactcctcctcccacgcagacaacctacgcctccacctccatgcctcagcctcttcttcccaccct 7179752  T
Q  211 aaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccg 310  Q
    ||||||||||||| |||||||| ||||||||||| |||||| |||||||| || |||||||| |||||||||||  |||| ||||||| ||||| |||||    
T  7179753 aaagctctcattgctgccaccgattccccctttaataacgataactcatacaacctactaaatctatcacgtaacgacaactctcccagccaaatatccg 7179852  T
Q  311 tccaaaata 319  Q
    |||||||||    
T  7179853 tccaaaata 7179861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 41691657 - 41691571
Alignment:
Q  129 cctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaaagc 215  Q
    ||||| |||||||||  ||||||||||||| ||||| || | ||||||||||||| | ||||| || | |||| |||| ||||||||    
T  41691657 cctaatctccactaccaactcctcctcccaagcaaacagacgacgtctccacctccaagcctccccatgttcttcccaacctaaagc 41691571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 38342530 - 38342232
Alignment:
Q  21 aatgagtgtattgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaataacattgtga 120  Q
    |||||| |||||||| ||||||||||| || |||||||||||| ||||||| | |||   |||||||||||||   ||||||||||||  |||||| |||    
T  38342530 aatgagcgtattgtatgcactctgaactgtgtaacaagaagaaggatccgcgttccacttccacctgtcctttcactgaacctgtaaagaaacattttga 38342431  T
Q  121 agtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaaagctctca 220  Q
    |||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||| || |||||||||||||| ||||||||||||||||||    
T  38342430 agtaaaagcctaagctccgctaccgactcctcctcccacgcaaacagcctacgcctccacctccacacctcaccctcttcttcccaccctaaagctctca 38342331  T
Q  221 ttgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccgtccaaaata 319  Q
    | | |||| | |  |||||||||| |||||| |||||||| || |||||||| |||||||||||  |||| ||||||| ||||| ||||||||||||||    
T  38342330 tcgctgccgctgactccccctttaataacgataactcatacaacctactaaatctatcacgtaacgacaactctcccacccaaatatccgtccaaaata 38342232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 40617257 - 40617563
Alignment:
Q  11 gaacctgtgcaatgagtgtattgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaat 110  Q
    ||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||| ||||| | | |||    ||  | ||||||   |||||||| |||      
T  40617257 gaacctgcgcaatgagagtattgtatgcactttgaactgtataacaagaagaaggatccacattccactttcaaatatcctttctgtgaacctgaaaaga 40617356  T
Q  111 aacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccct 210  Q
    |||||| || |||||||||||||||||| |||| ||||| |||||||| ||||| | |||||| ||||||||| ||||||||||||| ||  || | |||    
T  40617357 aacattttgtagtaaaagcctaagctcccctaccgactcttcctcccaagcaaacaacctacgcctccacctccacgcctcaccctcctcctcctaacct 40617456  T
Q  211 aaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccg 310  Q
    || |||||||| | ||| |  || | |||||||||||||||||||||||| || |||||||| |||||| ||||  |||| || |||| |||||||||||    
T  40617457 aacgctctcatcgctgcaatagtcttcccctttagtaacgacaactcatacaacctactaaatctatcatgtaacgacaactcacccacccaaacatccg 40617556  T
Q  311 tccaaaa 317  Q
    |||||||    
T  40617557 tccaaaa 40617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 88 - 317
Target Start/End: Complemental strand, 37137122 - 37136893
Alignment:
Q  88 tccttttgatgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacg 187  Q
    |||||||| ||||||| ||||  |||||| ||||||||||||||||| ||  |||| |||||||||||||||| ||| | ||| |  ||||||||| |||    
T  37137122 tccttttggtgaacctataaagaaacattttgaagtaaaagcctaagttctcctaccgactcctcctcccacgtaaacaacctgcacctccacctccacg 37137023  T
Q  188 cctcaccctcttctccccaccctaaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaa 287  Q
    |||||||||| ||  ||||||||||||   ||||    |||||||  ||||||||||| | |||||||||| | || || ||||| ||||| |||||  |    
T  37137022 cctcaccctcctcctcccaccctaaagaattcatccccgccaccgactccccctttagaagcgacaactcaaacaaccttctaaatctatcccgtaatga 37136923  T
Q  288 caattctcccaaccaaacatccgtccaaaa 317  Q
     || || |||||||||||||||||||||||    
T  37136922 gaactcacccaaccaaacatccgtccaaaa 37136893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 11883906 - 11883761
Alignment:
Q  111 aacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccct 210  Q
    |||||| |||||||||||| || ||||  | || ||| || |||||||| |||| | |||||| ||||| ||| |||| ||||||||  |||||||||||    
T  11883906 aacattatgaagtaaaagcgta-gctcttccaccgaccccacctcccacacaaacaacctacgcctccatctccacgcatcaccctcaactccccaccct 11883808  T
Q  211 aaagctctcattgatgccaccgtttccccctttagtaacgacaactc 257  Q
    || ||| |||| |||||||| |  ||||| |||||||| ||||||||    
T  11883807 aatgctttcatcgatgccactgactccccttttagtaatgacaactc 11883761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 317
Target Start/End: Complemental strand, 27854371 - 27854150
Alignment:
Q  97 tgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccct 196  Q
    |||||||| |||  |||||| ||||||||||||||||||||| ||||  |||| |||||||| ||  | | ||| |  ||||||||| | ||||||||||    
T  27854371 tgaacctgaaaagaaacattttgaagtaaaagcctaagctcctctaccaactcttcctcccaagcccacaaccttctcctccacctccaagcctcaccct 27854272  T
Q  197 cttctccccaccctaaagctctcattgatgccaccg-tttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctc 295  Q
    | ||  |||| ||||| |||||||| |  || ||||  | ||||||| |  | |||||| ||||| |  |||||||||||||| || |   |||| ||||    
T  27854271 cctcctcccaacctaacgctctcatcgtagcgaccgactccccccttcaaaaccgacaaatcatacagcctactaaacctatcccgaagcgacaactctc 27854172  T
Q  296 ccaaccaaacatccgtccaaaa 317  Q
    ||| | ||||||||||||||||    
T  27854171 ccacctaaacatccgtccaaaa 27854150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 35515611 - 35515519
Alignment:
Q  99 aacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctc 191  Q
    |||||| ||| ||||||| ||||||| ||||||||| ||| | ||  ||| ||| ||||||||||| | || ||| ||||||||| |||||||    
T  35515611 aacctgcaaattaacattttgaagtagaagcctaagatcccccactaacttctcttcccacgcaaacaacccacgcctccacctccacgcctc 35515519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 319
Target Start/End: Original strand, 54871361 - 54871649
Alignment:
Q  31 ttgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaataacattgtgaagtaaaagcc 130  Q
    ||||||||||||||||| || ||| ||||||||  ||| |||| | | ||||||||||||||||||||  ||||||||  ||||||||||||||||||||    
T  54871361 ttgtaagcactctgaactgtgtaagaagaagaagaatcagccttctaaagccacctgtccttttgatgtgcctgtaaagaaacattgtgaagtaaaagcc 54871460  T
Q  131 taagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaaagctctcattgatgccac 230  Q
    |||||||||| || ||||||||||||||| | || | || ||| ||||||||| ||||||||||||| ||  |||| |||||||||||||||| ||||||    
T  54871461 taagctccaccaccgactcctcctcccacacgaacaaccgacgcctccacctccacgcctcaccctcctcatcccatcctaaagctctcattgctgccac 54871560  T
Q  231 cgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccgtccaaaata 319  Q
     | ||| ||||| | ||| || |||||||| |  ||||||||||||||||||||  |||| ||||| ||||||| ||| ||||||||||    
T  54871561 agattctcccttaaataaagataactcatacagcctactaaacctatcacgtaacgacaactctccaaaccaaatatcagtccaaaata 54871649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 18921408 - 18921304
Alignment:
Q  91 ttttgatgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcct 190  Q
    |||| |||||||||||||  |||||| |||||||||||| |||| ||| |||  |||||||||||||||||||| | ||| |  ||||||||| |||| |    
T  18921408 tttttatgaacctgtaaagaaacattatgaagtaaaagcataagttcccctaacgactcctcctcccacgcaaacaacctcctcctccacctccacgcat 18921309  T
Q  191 caccc 195  Q
    |||||    
T  18921308 caccc 18921304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 7961753 - 7961934
Alignment:
Q  97 tgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccct 196  Q
    |||||||| |||  |||||| ||||||||||||||||||||| |||| ||||| |||||||| ||  | |||||||| ||||||||| ||||| ||||||    
T  7961753 tgaacctgaaaagaaacattttgaagtaaaagcctaagctcccctaccgactcttcctcccaagcccacagcctacgcctccacctccacgccccaccct 7961852  T
Q  197 cttctccccaccctaaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatc 278  Q
    | ||  |||||||||| |||||||| | ||| || |  ||| ||||||| | |||||||||||| || |||||||| |||||    
T  7961853 cctcctcccaccctaacgctctcatcgctgcaacagactcctcctttagaagcgacaactcatacaacctactaaatctatc 7961934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 317
Target Start/End: Original strand, 32018593 - 32018813
Alignment:
Q  97 tgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccct 196  Q
    |||||||| |||  |||||| ||||||||||||||||||||| ||||  |||| |||||||||||  | | ||| |  ||||||||| ||||||||||||    
T  32018593 tgaacctgaaaagaaacattttgaagtaaaagcctaagctcccctaccaactcttcctcccacgcccacaaccttctcctccacctccacgcctcaccct 32018692  T
Q  197 cttctccccaccctaaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcc 296  Q
    | ||  |||| |||||  ||||||| || || ||||  |||||||| |  | |||||| ||||| || || ||||||||||| || |  ||||| |||||    
T  32018693 cctcctcccaacctaacactctcatcgaagcgaccgactcccccttcaaaaccgacaagtcatacaacctcctaaacctatcccggagcaacaactctcc 32018792  T
Q  297 caaccaaacatccgtccaaaa 317  Q
    || |||||||||| |||||||    
T  32018793 cacccaaacatccatccaaaa 32018813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 32251678 - 32251598
Alignment:
Q  99 aacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctcca 179  Q
    |||||| ||| | ||||||| ||||||| ||||||| ||| ||||  ||||||||||||||||||| ||||||||||||||    
T  32251678 aacctgcaaagttacattgtcaagtaaaggcctaagttcccctaccaactcctcctcccacgcaaacagcctacgtctcca 32251598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 19315617 - 19315683
Alignment:
Q  146 actcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaa 212  Q
    ||||||||||||||||||| | ||| || ||||||||| ||||||||||||| || ||||| |||||    
T  19315617 actcctcctcccacgcaaacaacctccgcctccacctccacgcctcaccctcctccccccaacctaa 19315683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 842083 - 842326
Alignment:
Q  23 tgagtgtattgtaagcactctgaacagtataacaagaagaatgatccgcctgccatagccacctgtccttttgatgaacctgtaaaataacattgtgaag 122  Q
    |||| |||||||| ||||| ||||| ||||||||||||||| ||||||| | |||   |||  | ||||||   |||||||| |||  |||||| |||||    
T  842083 tgagagtattgtatgcactttgaactgtataacaagaagaaggatccgcattccacttccaaatatcctttctgtgaacctgaaaagaaacattttgaag 842182  T
Q  123 taaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaaagctctcatt 222  Q
    |||||||||||||||| |||| ||||| |||||||| || || ||||||      |||||| ||||||||||||| ||  | || ||||| ||||||||     
T  842183 taaaagcctaagctcccctaccgactcttcctcccaagccaacagccta------cacctccacgcctcaccctcctcctctcaacctaacgctctcatc 842276  T
Q  223 gatgccaccgtttccccctttagtaacgacaactcatataatctactaaa 272  Q
    |  || || |  |||||||| |||| |||||||||||| || ||||||||    
T  842277 gccgcaacagactcccccttcagtaccgacaactcatacaacctactaaa 842326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 317
Target Start/End: Complemental strand, 24739307 - 24739087
Alignment:
Q  97 tgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccct 196  Q
    ||||||||||||  |||||| ||||||||||||||||||||| |||    ||| |||||||| ||  | | ||| |  ||||||||| | ||||||||||    
T  24739307 tgaacctgtaaagaaacattttgaagtaaaagcctaagctcccctaatagctcttcctcccaagcccacaaccttctcctccacctccaagcctcaccct 24739208  T
Q  197 cttctccccaccctaaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcc 296  Q
    | ||  |||| ||||| ||||||||    || ||||  |||||||| || | |||||| ||||| || |||||||||||||| || |   |||| |||||    
T  24739207 cctcctcccaacctaacgctctcatcatagcaaccgactcccccttcagaaccgacaaatcatacaacctactaaacctatcccgaagcgacaactctcc 24739108  T
Q  297 caaccaaacatccgtccaaaa 317  Q
    || ||||||||||||||||||    
T  24739107 cacccaaacatccgtccaaaa 24739087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 40427557 - 40427665
Alignment:
Q  120 aagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaaagctctc 219  Q
    ||||||||||||||| | | ||   |||||||||||||||||||| | |||||  ||||||||| |||  |||||||||||  |||| ||||| ||||||    
T  40427557 aagtaaaagcctaagtttccctgacgactcctcctcccacgcaaacaacctacacctccacctccacgtgtcaccctcttcctcccaacctaaggctctc 40427656  T
Q  220 attgatgcc 228  Q
    |||| ||||    
T  40427657 attgttgcc 40427665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 12606330 - 12606236
Alignment:
Q  118 tgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaa 212  Q
    ||||||||||||||||| ||| | ||  ||||||| || ||||||||||||||||| ||||| ||| ||||| | |||||  | |||||||||||    
T  12606330 tgaagtaaaagcctaagatcccccactaactcctcttctcacgcaaaaagcctacgcctccaactccacgccgccccctcgaccccccaccctaa 12606236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 1998296 - 1998369
Alignment:
Q  91 ttttgatgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaa 164  Q
    |||| |||||||||||||   ||||| |||||||||||| |||| ||| |||  ||||||||||||||||||||    
T  1998296 tttttatgaacctgtaaagagacattatgaagtaaaagcataagttcccctaacgactcctcctcccacgcaaa 1998369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 32533798 - 32533879
Alignment:
Q  236 ccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctcccaaccaaacatccgtccaaaa 317  Q
    |||||||||||||| |||||||||| || |||||||| |||||||||||  |||| ||||||| ||||||||||| ||||||    
T  32533798 ccccctttagtaacaacaactcatacaacctactaaatctatcacgtaacgacaactctcccacccaaacatccgaccaaaa 32533879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 32533673 - 32533740
Alignment:
Q  97 tgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaa 164  Q
    |||||||| |||  |||||| ||||||||||||||||||||| |||| ||||| ||| ||||||||||    
T  32533673 tgaacctgaaaagaaacattttgaagtaaaagcctaagctcccctaccgactcttccgcccacgcaaa 32533740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 12687628 - 12687562
Alignment:
Q  146 actcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccctcttctccccaccctaa 212  Q
    ||||||||||||||| ||| | |||||| ||||| ||| ||||| ||||||| || |||||||||||    
T  12687628 actcctcctcccacgtaaacaacctacgcctccatctccacgccccaccctcctcaccccaccctaa 12687562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 5668022 - 5668066
Alignment:
Q  145 gactcctcctcccacgcaaaaagcctacgtctccacctctacgcc 189  Q
    ||||||||||| |||||||| | |||||||||||||||| |||||    
T  5668022 gactcctcctctcacgcaaacaacctacgtctccacctccacgcc 5668066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 317
Target Start/End: Complemental strand, 12687679 - 12687458
Alignment:
Q  97 tgaacctgtaaaataacattgtgaagtaaaagcctaagctccactaca-gactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcaccc 195  Q
    ||||||||||||  ||||||  ||||||||||  |||||||  | ||  ||||| |||||||||||||| | |||||  ||||||||| |||| |||||     
T  12687679 tgaacctgtaaagaaacatttcgaagtaaaagggtaagctcttccacccgactcttcctcccacgcaaacaacctacacctccacctccacgcatcacct 12687580  T
Q  196 tcttctccccaccctaaagctctcattgatgccaccgtttccccctttagtaacgacaactcatataatctactaaacctatcacgtaaaaacaattctc 295  Q
    ||   |||||||||||| ||| |||| || | ||| |  |||||||||||||||||||||||||| || ||| |||| ||| | |||||  |||  || |    
T  12687579 tcaattccccaccctaatgctttcatcgaaggcactgactccccctttagtaacgacaactcatacaacctaataaatctaacccgtaacgacacctcgc 12687480  T
Q  296 ccaaccaaacatccgtccaaaa 317  Q
    | | ||||||||| ||||||||    
T  12687479 ctacccaaacatcagtccaaaa 12687458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 5677358 - 5677456
Alignment:
Q  96 atgaacctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcacc 194  Q
    |||||||||||||   ||||| ||||||||||   |||||||  | || ||||||||||||||| |||| | |||||||||||||||| ||||||||||    
T  5677358 atgaacctgtaaagacacattttgaagtaaaataataagctcttccaccgactcctcctcccacacaaacaacctacgtctccacctccacgcctcacc 5677456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 5992 - 5898
Alignment:
Q  100 acctgtaaaataacattgtgaagtaaaagcctaagctccactacagactcctcctcccacgcaaaaagcctacgtctccacctctacgcctcacc 194  Q
    ||||||||||  ||||| ||||||||||   |||||||  | || ||||||||||||||||| || | |||||||||||||||| ||||||||||    
T  5992 acctgtaaaaccacattttgaagtaaaatgataagctcttccaccgactcctcctcccacgcgaataacctacgtctccacctccacgcctcacc 5898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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