View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_28 (Length: 418)
Name: NF3223_low_28
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 37452371 - 37452734
Alignment:
| Q |
1 |
aagacaaatattaaaatatagaaaaagaaggaagaaacattttcgtaatttgaataccatgtgattaaaggaagaaaagttttcataatttgaataccat |
100 |
Q |
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| T |
37452371 |
aagagaaatattaaaatatagaaaaagaaggaagaaacattttcgtaatttgaataccatgtgattaaaggaagaaaagttttcataatttgaataccat |
37452470 |
T |
|
| Q |
101 |
atatgattaatcttgttagaatagtaaacaataccttactatttagtttagcaacccaaatcttaatttgttacataagtcaacagtaattgattcagtt |
200 |
Q |
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| T |
37452471 |
at--gattaatcttgttagaatagtaaacaatacgttacgatttagtttagcaacctaaatcttaatttgttacataagtcaacagtaattgattcagtt |
37452568 |
T |
|
| Q |
201 |
agatttgactcattcaattgcgaggatataaattcgaactcttgctctgagcaaaagaacctcgagcttattaatgagttatttgtcaattttatacttc |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37452569 |
agatttgactcattcaattgtgaggatataaattcgaactcttgctctaagcaaaagaacctcgagcttattaatgaattatttgtcaattttatacttc |
37452668 |
T |
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| Q |
301 |
tatttgagtcttgagttccgccataacttcaatgttcttacccaactcacataagctttcttctat |
366 |
Q |
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||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37452669 |
tatttgaatcttgaggtccgccataactccaatgttcttacccaactcacataagctttcttctat |
37452734 |
T |
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