View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_32 (Length: 411)
Name: NF3223_low_32
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 26)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 31330277 - 31329893
Alignment:
| Q |
9 |
gaagaaaatatagaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31330277 |
gaagaaaatatagaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactata |
31330178 |
T |
|
| Q |
109 |
tgcatctggtgttatatgcattaatttatcgaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgactt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31330177 |
tgcatctggtgttatatgcattaatttatcaaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgactt |
31330078 |
T |
|
| Q |
209 |
cttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31330077 |
cttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaa |
31329978 |
T |
|
| Q |
309 |
agagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31329977 |
agagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagaaaatcccagaaatctccacacctttgg |
31329893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 31379059 - 31378675
Alignment:
| Q |
9 |
gaagaaaatatagaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31379059 |
gaagaaaatatagaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcaccgtgacagcaaaggatgcacatgaaatgagactata |
31378960 |
T |
|
| Q |
109 |
tgcatctggtgttatatgcattaatttatcgaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgactt |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31378959 |
tgcatctggtgttatatgcattaacttatcgaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgactt |
31378860 |
T |
|
| Q |
209 |
cttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
31378859 |
cttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtatagagaattatcttgaacaaattccaatctccaa |
31378760 |
T |
|
| Q |
309 |
agagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31378759 |
agagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
31378675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 31313599 - 31313215
Alignment:
| Q |
9 |
gaagaaaatatagaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactata |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31313599 |
gaagaaaatatagaagatcgatttcaaatccgcattgaattttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactata |
31313500 |
T |
|
| Q |
109 |
tgcatctggtgttatatgcattaatttatcgaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgactt |
208 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||| ||| ||||||| ||||| |
|
|
| T |
31313499 |
tgcatctggtgtattatccattaatttatcaaaaaaatatgaatacagtgacgtgattgccaatacaacaaatgttgtatgagctacgaaccaatgactt |
31313400 |
T |
|
| Q |
209 |
cttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaa |
308 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||| ||||| |||| |||| |||||| |
|
|
| T |
31313399 |
cttgggtgttgccaaatccttgcggcaaataaaactaacacgcaaaggatgaaactgaaaacagtgtaaagagttatcaccaacatggtccatcctccaa |
31313300 |
T |
|
| Q |
309 |
agagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
31313299 |
atagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttgg |
31313215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 31363349 - 31362968
Alignment:
| Q |
9 |
gaagaaaatatagaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactata |
108 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
31363349 |
gaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttgacaaactaagcgctgagacagcaaaggatgcacatgaaatgagactata |
31363250 |
T |
|
| Q |
109 |
tgcatctggtgttatatgcattaatttatcgaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgactt |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| ||||| || || || ||||||||||||||| ||||||||| ||| |||| || ||||| |
|
|
| T |
31363249 |
tgcatctggtgtattatgcattaatttatcgaagaaatacgaatacagtgatgtcattgccaatacaacaaatgttgtattagctatgaacaaatgactt |
31363150 |
T |
|
| Q |
209 |
cttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaa |
308 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||| |||| | ||| |||||||||||||||||| |||| |||| |||| |||||| |
|
|
| T |
31363149 |
cttgagtgttgccatatcctt---ggaaataaaactaacacgcaaagggcgaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaa |
31363053 |
T |
|
| Q |
309 |
agagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
31363052 |
agagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttgg |
31362968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 31279240 - 31279607
Alignment:
| Q |
20 |
agaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggtg |
119 |
Q |
| |
|
|||||||| | |||||||||||| ||||||| || |||||||||||| | | ||| ||||||||| |||||||||||||| |||||| |||| ||| |
|
|
| T |
31279240 |
agaagatcaacttcaaatccgcactgagtttg---ccgcgacaaactaagtgacatgatagcaaaggaagcacatgaaatgaggctatatccatcaggtt |
31279336 |
T |
|
| Q |
120 |
ttatatgcattaatttatcgaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgacttcttgagtgttg |
219 |
Q |
| |
|
| || ||| ||||||||||| ||| ||||||||||||| || |||| |||||| | ||||| ||| || |||| ||| | | |||||||||||||| | |
|
|
| T |
31279337 |
tcccattcatcaatttatcgaagaaaaatgaatatagcgaggtcattgtcaataccaaatatgctgtgtgtgctttgaatcgaagacttcttgagtgtcg |
31279436 |
T |
|
| Q |
220 |
ccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttg |
319 |
Q |
| |
|
|||||| || | |||||||| | || | |||||||||||||||||| |||||| | ||||| || |||||||| |||||||||||||||||| |
|
|
| T |
31279437 |
ccatatatttac---aaataaaacgaccaagctaatgatgaagctgaaaacgccgtaaaggaaaatcttcaagaaattccattctccaaagagatagttg |
31279533 |
T |
|
| Q |
320 |
aaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||||| ||| |||||| || | |||||||||||| ||||| |
|
|
| T |
31279534 |
aaggaagagctgagagcataacaaaccagtccaacaacaactgaagcaaagcctacaaatctccacacttttgg |
31279607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 251 - 392
Target Start/End: Original strand, 40843303 - 40843444
Alignment:
| Q |
251 |
caaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtc |
350 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| || ||||||| |||| ||||| |
|
|
| T |
40843303 |
caaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtc |
40843402 |
T |
|
| Q |
351 |
caacaacagctgcagcaaatcccagaaatctccacacctttg |
392 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
40843403 |
caacagcagctgaagcaaatcccacaaatctccatacctttg |
40843444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 251 - 392
Target Start/End: Original strand, 31475921 - 31476062
Alignment:
| Q |
251 |
caaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtc |
350 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||| |||||||| |||||||| || ||||||| |||||||||| |
|
|
| T |
31475921 |
caaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtc |
31476020 |
T |
|
| Q |
351 |
caacaacagctgcagcaaatcccagaaatctccacacctttg |
392 |
Q |
| |
|
||||| |||||| |||||| |||| ||||||||| ||||||| |
|
|
| T |
31476021 |
caacagcagctgaagcaaagcccacaaatctccatacctttg |
31476062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 31643635 - 31644002
Alignment:
| Q |
20 |
agaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggtg |
119 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| | ||||||||||||| | | ||| ||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
31643635 |
agaagatcgaattcaaatccgcactcagtttg---cgtcgacaaactaagtgacatgatagcaaaggaagcacaagaaatgaggctatatgcatctggtt |
31643731 |
T |
|
| Q |
120 |
ttatatgcattaatttatcgaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgacttcttgagtgttg |
219 |
Q |
| |
|
|| || || | |||||| || ||| ||||||||| ||| ||||||| ||||| | ||||| ||| || |||| ||| | | |||||||||| |||| |
|
|
| T |
31643732 |
ttccattcaccactttatcaaagaaaaatgaatataacgaagtgattgttaataccaaatatgctgtgtgtgctttgaatcgaatacttcttgagggttg |
31643831 |
T |
|
| Q |
220 |
ccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttg |
319 |
Q |
| |
|
||| || |||| ||||||||| | | | |||||||| |||||||| ||||||| | ||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
31643832 |
ccacatttttgc---aaataaaatcatgaggctgatgatgaaactgaaaacgctgtaaaggaaaatcttcaacagattccaatctccaaatagatagttg |
31643928 |
T |
|
| Q |
320 |
aaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
|||||||| || ||||||| ||||| |||||||||| || || |||||| |||| ||||||||| |||||||| |
|
|
| T |
31643929 |
aaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaagcccacaaatctccatacctttgg |
31644002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 392
Target Start/End: Original strand, 31407396 - 31407534
Alignment:
| Q |
254 |
atgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaa |
353 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||||| ||||||||||||| |||||| |||| ||||||||||| |||||||||| || |||| ||||| |
|
|
| T |
31407396 |
atgatgaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaa |
31407495 |
T |
|
| Q |
354 |
caacagctgcagcaaatcccagaaatctccacacctttg |
392 |
Q |
| |
|
|| |||||| |||||| |||| |||||||||||| |||| |
|
|
| T |
31407496 |
cagcagctgaagcaaagcccacaaatctccacacttttg |
31407534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 82 - 393
Target Start/End: Complemental strand, 31284994 - 31284686
Alignment:
| Q |
82 |
aaaggatgcacatgaaatgagactatatgcatctggtgttatatgcattaatttatcgaaaaaatatgaatatagcgacgtgattgccaatacaacatat |
181 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| || || | || |||||| || ||| ||||||||| || ||||||| |||||| | | | |
|
|
| T |
31284994 |
aaaggaagcacatgaaatgaggctatatgcatctggttttccattaactactttatcaaagaaaaatgaatataatgaggtgattgtcaataccaaaaac |
31284895 |
T |
|
| Q |
182 |
gttgtatgcgcttggaaccaacgacttcttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaa |
281 |
Q |
| |
|
| | ||| |||| ||||| | ||||||| |||| |||||| |||||||| ||| |||| | || | |||||||||||||||| |||| || | |
|
|
| T |
31284894 |
gcagcatgagctttgaaccgaagacttctcgagttttgccacatccttgc---aaacaaaaccaccaagctgatgatgaagctgaaaatgctgtagagga |
31284798 |
T |
|
| Q |
282 |
ttatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatct |
381 |
Q |
| |
|
||||||| | || |||||| |||||||||||||||||||||||||| || ||||||| ||||||||||||| | ||| || |||||| |||| |||||| |
|
|
| T |
31284797 |
ttatcttcagcagattccagtctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaatagcagatgaagcaaagcccacaaatct |
31284698 |
T |
|
| Q |
382 |
ccacacctttgg |
393 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
31284697 |
ccacacttttgg |
31284686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 254 - 393
Target Start/End: Complemental strand, 31332307 - 31332168
Alignment:
| Q |
254 |
atgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaa |
353 |
Q |
| |
|
|||||||| |||||| || |||| |||| ||| || ||||||||||| ||||||||||| |||||||||||||| || | ||||| ||||||||||||| |
|
|
| T |
31332307 |
atgatgaaactgaaagcactgtagagaaatattttcaacaaattccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaa |
31332208 |
T |
|
| Q |
354 |
caacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
|||||| || |||||| || | |||||||||||||||||| |
|
|
| T |
31332207 |
caacagatgaagcaaagccaacaaatctccacacctttgg |
31332168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 393
Target Start/End: Complemental strand, 31381092 - 31380953
Alignment:
| Q |
254 |
atgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaa |
353 |
Q |
| |
|
|||||||| |||||| || |||| |||| ||| || ||||||||||| ||||||||||| || ||||||||||| || | ||||| ||||||||||||| |
|
|
| T |
31381092 |
atgatgaaactgaaagcactgtagagaaatattttcaacaaattccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaa |
31380993 |
T |
|
| Q |
354 |
caacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
|||||| || |||||| || | |||||||||||||||||| |
|
|
| T |
31380992 |
caacagatgaagcaaagccaacaaatctccacacctttgg |
31380953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 369
Target Start/End: Complemental strand, 31281712 - 31281426
Alignment:
| Q |
79 |
agcaaaggatgcacatgaaatgagactatatgcatctggtgttatatgcattaatttatcgaaaaaatatgaatatagcgacgtgattgccaatacaaca |
178 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||| || || ||| | |||||| || ||| | ||||| ||||| ||||||| ||||| | | |
|
|
| T |
31281712 |
agcaaaggcggcacatgaaattagactgtatgcatctggttttccattcatcactttatcaaagaaaaaggaatacagcgaagtgattgttaatacca-a |
31281614 |
T |
|
| Q |
179 |
tatgttgtatgcgcttggaaccaacgacttcttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaa |
278 |
Q |
| |
|
|||| | || |||| ||| | | |||||||||||||| ||||||| |||| |||||||| | || | |||||||||||||||||| ||||| |
|
|
| T |
31281613 |
tatgccgagtgtgctttgaagcgaagacttcttgagtgtcgccatatatttgc---aaataaaacgaccaagctaatgatgaagctgaaaacgccgtaaa |
31281517 |
T |
|
| Q |
279 |
gaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaa |
369 |
Q |
| |
|
| | ||||| |||||||||||||||||||||||||| ||||||||||| || | ||||| ||||| ||||||| |||||||| |||||| |
|
|
| T |
31281516 |
ggaaaatcttcaacaaattccaatctccaaagagataattgaaggaagagcttaaagcataacaaagaagtccaagaacagctgaagcaaa |
31281426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 393
Target Start/End: Complemental strand, 31317487 - 31317327
Alignment:
| Q |
233 |
gcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactga |
332 |
Q |
| |
|
||||||||||| | || || |||||||| |||||| | ||||||||| ||| || ||||||||||| ||||||||||||||||| |||||||| || | |
|
|
| T |
31317487 |
gcaaataaaatcaccaagcagatgatgaaactgaaagcgctgtaaagaaatattttcaacaaattccattctccaaagagatagttaaaggaagagctta |
31317388 |
T |
|
| Q |
333 |
gagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
|||| ||||| |||||||||| || || |||||| |||| |||||||||||||||||| |
|
|
| T |
31317387 |
atgcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttgg |
31317327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 393
Target Start/End: Complemental strand, 31368701 - 31368541
Alignment:
| Q |
233 |
gcaaataaaattaacacacaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactga |
332 |
Q |
| |
|
||||||||||| | || || |||||||| |||| | | ||||||||| ||| || |||||||| || ||||||||||||||||| |||||||| || | |
|
|
| T |
31368701 |
gcaaataaaatcaccaagcagatgatgaaactgacagcgctgtaaagaaatattttcaacaaatttcattctccaaagagatagttaaaggaagagctta |
31368602 |
T |
|
| Q |
333 |
gagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctccacacctttgg |
393 |
Q |
| |
|
||||| ||||| |||||||||| || || |||||| |||| |||||||||||||||||| |
|
|
| T |
31368601 |
aagcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttgg |
31368541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 392
Target Start/End: Complemental strand, 31395867 - 31395729
Alignment:
| Q |
254 |
atgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaa |
353 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||| |||| |||| | |||||| |||| ||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
31395867 |
atgatgaaactgaaaactgtgtaaagaactatcttccacaatctccagtttccaaatagatgattgaaggaagagctgagagcataacaaacaagtccaa |
31395768 |
T |
|
| Q |
354 |
caacagctgcagcaaatcccagaaatctccacacctttg |
392 |
Q |
| |
|
||||||||| |||| |||| | ||||||||| ||||||| |
|
|
| T |
31395767 |
caacagctgaagcacatccaacaaatctccatacctttg |
31395729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 392
Target Start/End: Original strand, 31416529 - 31416667
Alignment:
| Q |
254 |
atgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaa |
353 |
Q |
| |
|
|||||||| ||| ||| ||| |||||||||| ||| ||||||||||||| |||||| |||| |||||| ||||| || ||||||| |||| |||||||| |
|
|
| T |
31416529 |
atgatgaaactggaaagagtataaagaattaccttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcataacaaatcagtccaa |
31416628 |
T |
|
| Q |
354 |
caacagctgcagcaaatcccagaaatctccacacctttg |
392 |
Q |
| |
|
|| |||| | | |||| || | |||||||||||| |||| |
|
|
| T |
31416629 |
cagcagcggaaacaaagcctacaaatctccacacttttg |
31416667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 362
Target Start/End: Original strand, 31505876 - 31505987
Alignment:
| Q |
251 |
caaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtc |
350 |
Q |
| |
|
|||||||||| | ||||||| |||||| | |||||| ||| ||||||||| |||||| |||| | | ||||||||||||||||||| ||||||| || |
|
|
| T |
31505876 |
caaatgatgagacagaaaacaccgtaaaggaatatcttcaaccaattccaatttccaaatagatggataaaggaagaactgagagcataacaaagcaatc |
31505975 |
T |
|
| Q |
351 |
caacaacagctg |
362 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31505976 |
caacaacagctg |
31505987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 31462998 - 31463075
Alignment:
| Q |
250 |
acaaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaaga |
327 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||| ||||| ||||| ||||||| |||||| |||| |||||||||||| |
|
|
| T |
31462998 |
acaaataatgaaactgaaaacagtgtagagaataatcttcaacaagttccaatttccaaatagatggttgaaggaaga |
31463075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 392
Target Start/End: Original strand, 31494128 - 31494244
Alignment:
| Q |
276 |
aaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccag |
375 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||||| |||| |||||| ||||| || ||||||| ||||||| ||||| |||||||| | |||| | | |
|
|
| T |
31494128 |
aaagaattaccttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcataacaaagcaatccaataacagctgaaacaaagctaac |
31494227 |
T |
|
| Q |
376 |
aaatctccacacctttg |
392 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
31494228 |
aaatctccacacttttg |
31494244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 31390809 - 31390896
Alignment:
| Q |
251 |
caaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcat |
338 |
Q |
| |
|
||||| ||||| |||||||||||||| |||| ||||| ||||| ||||| | |||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
31390809 |
caaataatgaaactgaaaacagtgtacagaaaaatctttaacaagttccagtttccaaatagatggttgaaggaagaacttagagcat |
31390896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 31288564 - 31288455
Alignment:
| Q |
284 |
atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagcaaatcccagaaatctcc |
383 |
Q |
| |
|
||||| |||| |||||| |||||| ||||||| ||||||||||| | ||| ||| | ||||||||||||||||||| |||||| || | |||||||| |
|
|
| T |
31288564 |
atcttcaacagattccagtctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaagcaaagcctacaaatctcc |
31288465 |
T |
|
| Q |
384 |
acacctttgg |
393 |
Q |
| |
|
|||| ||||| |
|
|
| T |
31288464 |
acacttttgg |
31288455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 31505686 - 31505746
Alignment:
| Q |
58 |
cgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggt |
118 |
Q |
| |
|
||||||||| |||| | ||| ||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
31505686 |
cgacaaactgagcgacatgatagcaaaggaagcacttgaaatgaggctatatgcatctggt |
31505746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 31317701 - 31317599
Alignment:
| Q |
13 |
aaaatatagaagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgca |
112 |
Q |
| |
|
|||||| |||||||| ||||||||||| || ||||||| ||| ||||||||||| | | | | |||||||| ||||||||||| | |||||||||| |
|
|
| T |
31317701 |
aaaataaagaagatcaatttcaaatccccactgagtttg---ccttgacaaactaagtgacataatagcaaaggcagcacatgaaattaaactatatgca |
31317605 |
T |
|
| Q |
113 |
tctggt |
118 |
Q |
| |
|
|||||| |
|
|
| T |
31317604 |
tctggt |
31317599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 31483782 - 31483739
Alignment:
| Q |
257 |
atgaagctgaaaacagtgtaaagaattatcttgaacaaattcca |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
31483782 |
atgaaactgaaaacagtgtaaagaattatcttcaacaaactcca |
31483739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 31493889 - 31493982
Alignment:
| Q |
22 |
aagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggt |
118 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| | |||||||| ||||||| | ||| |||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
31493889 |
aagatcgacttcaaatccgcactgaatttgg---ctcgacaagctaagcgacatgatagcaaaggcagcacatgttattagactatatgcatctggt |
31493982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 25708531 - 25708415
Alignment:
| Q |
268 |
aacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgcagca |
367 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||| || ||||| ||||| || || ||||| |||||||||| || | |||||||||| ||||| |||| |
|
|
| T |
25708531 |
aacactgtaaagaattatctttgacaagttccactcaccaaacagataattaaatgaagagctgagagcataacagactagtccaacaatagctgaagca |
25708432 |
T |
|
| Q |
368 |
aatcccagaaatctcca |
384 |
Q |
| |
|
|| || | ||||||||| |
|
|
| T |
25708431 |
aaaccaacaaatctcca |
25708415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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