View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_33 (Length: 409)
Name: NF3223_low_33
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_33 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 13085316 - 13084924
Alignment:
| Q |
18 |
ggtggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcatgcggttaggttgggagtgggtcttgtcaggtaatttggtgg |
117 |
Q |
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| T |
13085316 |
ggtggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcaggcggttaggttgggagtgggtcttgtcaggtaatttggtgg |
13085217 |
T |
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| Q |
118 |
tgttgtttcaggtgtttgtattcttaaaggcaaagaggcggtataggctaggtttccttttggtctagaattcaactgtgtgatctatttggaaagtccg |
217 |
Q |
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| T |
13085216 |
tgttgtttcaggtgtttgtattcttaaaggcaaagaggcggtataggctaggtttccttttggtctagcatgcaactgtgtgatctatttggaaagtccg |
13085117 |
T |
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| Q |
218 |
aaataatttac-nnnnnnnnnnnggaagacttgttgaggttgagcatctgctggatagaatccaatttcattaatggaagtggttctttgccatacaaca |
316 |
Q |
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| T |
13085116 |
aaataatttacttttttttttttggaagacttgttgaggttgagcatctactcgatagaatccaatttcattaatggaagtggttctttgccatacacca |
13085017 |
T |
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| Q |
317 |
ttcacatcattacttactttataagtggaagggggagctcgtccttgctgaaacaaattaggttctgtgtgttggccgaagttggatttgatt |
409 |
Q |
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| T |
13085016 |
ttcacatcattgcttactttataagtggaaggtggagctcgtccttgttgaaaccaataaggttcggtgtgttggtcggagatggatttgatt |
13084924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 13013939 - 13013846
Alignment:
| Q |
18 |
ggtggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcatgcggttaggttgggagtgggtcttgtcaggtaatt |
111 |
Q |
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| T |
13013939 |
ggtggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcaggcggttaggttgggagtgggtcttgtcaggtaatt |
13013846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 13013847 - 13013768
Alignment:
| Q |
330 |
ttactttataagtggaagggggagctcgtccttgctgaaacaaattaggttctgtgtgttggccgaagttggatttgatt |
409 |
Q |
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| T |
13013847 |
ttactttataagtggaaggtggagctcgtccttgttgaaaccaataaggttcggtgtgttggttggagatggatttgatt |
13013768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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