View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_35 (Length: 402)
Name: NF3223_low_35
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 16254670 - 16254872
Alignment:
| Q |
19 |
aacatgagtttcttttgtgccattatcaacatgaatttgatcatgtttattttcattcaaagatttccttgaaacatattggcaaatgtttttgattagg |
118 |
Q |
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| T |
16254670 |
aacatgagtttcttttgtgccattatcaacatgaatttgatcatgtttattttcattcaaagatttccttgaaacatgttggcaaatgtttttaattagg |
16254769 |
T |
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| Q |
119 |
tcat---cactcaaaggcttaacacaatactcacaagccccgtttgcaatagccttcatagctgcacttgttgatccatctttacccatcactgcacatg |
215 |
Q |
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| T |
16254770 |
tcatcatcactcaaaggcttaacacaatactcacaagccccgtttgcaatagccttcatagctgcacttgttgatccatctttacccatcactgcacatg |
16254869 |
T |
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| Q |
216 |
tca |
218 |
Q |
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||| |
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| T |
16254870 |
tca |
16254872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 282 - 396
Target Start/End: Original strand, 16254937 - 16255051
Alignment:
| Q |
282 |
tcttactaatgacaggaatattgatttgttgggtaatttgttggagaaaatcataggaattcatgtctgacatttgttcttcaattagtatcacatcaaa |
381 |
Q |
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| T |
16254937 |
tcttactaatgacaggaatattgatttgttgggtaatttgttggagaaaatcataggaattcatgtctgaaatttgttcttcaattagtatcacatcaaa |
16255036 |
T |
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| Q |
382 |
acaaccctttgcttc |
396 |
Q |
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| T |
16255037 |
acaaccctttgcttc |
16255051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 38880670 - 38880768
Alignment:
| Q |
282 |
tcttactaatgacaggaatattgatttgttgggtaatttgttggagaaaatcataggaattcatgtctgacatttgttcttcaattagtatcacatcaa |
380 |
Q |
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| T |
38880670 |
tcttactgatgacagaaatattgatttgttgggtaacatgtcggacaaaatcatatgaatccatgtctggcatttgagcttcaattagtaccacatcaa |
38880768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 38880405 - 38880564
Alignment:
| Q |
57 |
gatcatgtttattttcattcaaagatttccttgaaacatattggcaaatgtttttgattaggtcatcactcaaaggcttaacacaatactcacaagcccc |
156 |
Q |
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|||||||||||||||||||| || |||||||| |||| | || || ||||| |||||| | | || | |||||||||| ||| | || |||||||| |
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| T |
38880405 |
gatcatgtttattttcattccaaactttccttgcaacacactgccacatgttcttgatttgattctcgatgaaaggcttaatccaaaattcgcaagcccc |
38880504 |
T |
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| Q |
157 |
gtttgcaatagccttcatagctgcacttgttgatccatctttacccatcactgcacatgt |
216 |
Q |
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| T |
38880505 |
gtttgtaacagctttcatcactgcatttgttgatccatcatcacacatcactgcacatgt |
38880564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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