View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_38 (Length: 390)

Name: NF3223_low_38
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_38
NF3223_low_38
[»] chr5 (28 HSPs)
chr5 (1-376)||(35904319-35904694)
chr5 (183-264)||(2366353-2366434)
chr5 (203-249)||(583038-583084)
chr5 (203-249)||(9395399-9395445)
chr5 (203-249)||(11795217-11795263)
chr5 (203-249)||(23359991-23360037)
chr5 (203-249)||(36563573-36563619)
chr5 (203-249)||(37148990-37149036)
chr5 (203-257)||(39030588-39030642)
chr5 (203-249)||(41989442-41989488)
chr5 (165-249)||(13033100-13033184)
chr5 (205-260)||(20848112-20848167)
chr5 (203-249)||(6126873-6126919)
chr5 (203-249)||(13103073-13103119)
chr5 (1-39)||(30502398-30502436)
chr5 (1-39)||(30542741-30542779)
chr5 (203-265)||(34252742-34252804)
chr5 (183-257)||(39290815-39290889)
chr5 (204-257)||(12002778-12002831)
chr5 (204-249)||(21575995-21576040)
chr5 (204-249)||(26350386-26350431)
chr5 (180-249)||(36595786-36595855)
chr5 (203-252)||(42324916-42324965)
chr5 (183-263)||(14325879-14325959)
chr5 (204-264)||(20219522-20219582)
chr5 (203-235)||(26835283-26835315)
chr5 (217-257)||(35549206-35549246)
chr5 (195-227)||(39030624-39030656)
[»] chr2 (35 HSPs)
chr2 (178-260)||(12170409-12170491)
chr2 (183-257)||(16734824-16734898)
chr2 (208-260)||(41453097-41453149)
chr2 (203-260)||(38917557-38917614)
chr2 (195-235)||(35311237-35311277)
chr2 (203-249)||(3055607-3055653)
chr2 (203-249)||(6648554-6648600)
chr2 (203-249)||(9047790-9047836)
chr2 (203-249)||(12337972-12338018)
chr2 (203-249)||(13197745-13197791)
chr2 (203-249)||(15372275-15372321)
chr2 (203-249)||(15896891-15896937)
chr2 (203-249)||(16243818-16243864)
chr2 (203-249)||(37990048-37990094)
chr2 (203-249)||(41478674-41478720)
chr2 (183-249)||(41492911-41492977)
chr2 (203-249)||(44397596-44397642)
chr2 (203-249)||(44398735-44398781)
chr2 (183-249)||(44804593-44804659)
chr2 (204-249)||(13344533-13344578)
chr2 (195-235)||(16180488-16180528)
chr2 (203-235)||(31469096-31469128)
chr2 (195-257)||(27279995-27280058)
chr2 (206-265)||(43398861-43398920)
chr2 (195-257)||(45294365-45294427)
chr2 (207-249)||(4683971-4684013)
chr2 (203-257)||(13724137-13724191)
chr2 (1-39)||(28677920-28677958)
chr2 (183-249)||(30099197-30099263)
chr2 (203-256)||(12320214-12320267)
chr2 (195-235)||(7932760-7932800)
chr2 (203-235)||(10459291-10459323)
chr2 (195-255)||(19924321-19924381)
chr2 (209-257)||(35990558-35990606)
chr2 (195-255)||(41374562-41374622)
[»] scaffold0650 (1 HSPs)
scaffold0650 (184-257)||(1-74)
[»] chr8 (29 HSPs)
chr8 (182-295)||(17006914-17007027)
chr8 (182-295)||(17570220-17570333)
chr8 (180-257)||(8587211-8587288)
chr8 (165-249)||(27422239-27422323)
chr8 (183-249)||(12343155-12343221)
chr8 (203-249)||(25601035-25601081)
chr8 (183-249)||(43199369-43199435)
chr8 (210-281)||(28463628-28463699)
chr8 (203-249)||(54647-54693)
chr8 (203-249)||(2890197-2890243)
chr8 (203-249)||(3304313-3304359)
chr8 (203-249)||(6552704-6552750)
chr8 (203-249)||(7785813-7785859)
chr8 (203-249)||(12763689-12763735)
chr8 (203-249)||(31654662-31654708)
chr8 (203-249)||(33289296-33289342)
chr8 (203-249)||(39571238-39571284)
chr8 (203-260)||(13578895-13578952)
chr8 (178-257)||(13246804-13246883)
chr8 (1-39)||(4611545-4611583)
chr8 (204-246)||(7012223-7012265)
chr8 (203-249)||(7805734-7805780)
chr8 (203-249)||(15888387-15888433)
chr8 (203-281)||(24692014-24692091)
chr8 (203-249)||(32114510-32114556)
chr8 (203-249)||(32211398-32211444)
chr8 (203-249)||(44498222-44498268)
chr8 (216-257)||(39591233-39591274)
chr8 (179-235)||(41450889-41450945)
[»] chr3 (34 HSPs)
chr3 (178-257)||(33942942-33943021)
chr3 (183-260)||(8437463-8437540)
chr3 (183-249)||(4238643-4238709)
chr3 (183-257)||(9213557-9213631)
chr3 (183-249)||(38964441-38964507)
chr3 (203-264)||(40691031-40691092)
chr3 (217-281)||(43323077-43323141)
chr3 (178-281)||(26019490-26019592)
chr3 (190-256)||(8092630-8092696)
chr3 (203-249)||(8817421-8817467)
chr3 (203-249)||(10298028-10298074)
chr3 (203-249)||(17653761-17653807)
chr3 (203-249)||(19557087-19557133)
chr3 (203-249)||(22721980-22722026)
chr3 (203-249)||(34080065-34080111)
chr3 (203-249)||(37508970-37509016)
chr3 (203-249)||(42170381-42170427)
chr3 (203-249)||(44785431-44785477)
chr3 (203-249)||(48340446-48340492)
chr3 (203-249)||(49823416-49823462)
chr3 (195-252)||(32221506-32221563)
chr3 (204-249)||(36095716-36095761)
chr3 (217-257)||(8951945-8951985)
chr3 (195-263)||(32988346-32988414)
chr3 (203-249)||(2787867-2787913)
chr3 (203-249)||(6013371-6013417)
chr3 (1-39)||(7928461-7928499)
chr3 (203-249)||(9111529-9111575)
chr3 (1-39)||(16192760-16192798)
chr3 (203-249)||(21295361-21295407)
chr3 (203-249)||(42507390-42507436)
chr3 (203-249)||(46208079-46208125)
chr3 (203-249)||(51406722-51406768)
chr3 (209-257)||(10449538-10449586)
[»] chr7 (22 HSPs)
chr7 (183-249)||(40840134-40840200)
chr7 (183-300)||(9575407-9575524)
chr7 (183-295)||(7269420-7269532)
chr7 (203-249)||(1565764-1565810)
chr7 (203-249)||(1738482-1738528)
chr7 (203-249)||(7240798-7240844)
chr7 (203-249)||(9268805-9268851)
chr7 (203-249)||(31319434-31319480)
chr7 (203-249)||(38063948-38063994)
chr7 (203-249)||(46840909-46840955)
chr7 (203-260)||(16866429-16866486)
chr7 (165-249)||(36583444-36583528)
chr7 (178-249)||(94328-94399)
chr7 (203-249)||(7482274-7482320)
chr7 (1-39)||(17307904-17307942)
chr7 (203-249)||(22285748-22285794)
chr7 (203-249)||(23314174-23314220)
chr7 (203-249)||(33418425-33418471)
chr7 (203-249)||(36016231-36016277)
chr7 (203-249)||(38441509-38441555)
chr7 (187-264)||(14706730-14706807)
chr7 (195-235)||(6803324-6803364)
[»] chr4 (32 HSPs)
chr4 (183-257)||(41615691-41615765)
chr4 (164-249)||(5986925-5987010)
chr4 (178-249)||(24704419-24704490)
chr4 (207-257)||(25855124-25855174)
chr4 (183-249)||(47838632-47838698)
chr4 (203-257)||(50430453-50430507)
chr4 (180-249)||(3993025-3993094)
chr4 (183-250)||(45725904-45725971)
chr4 (203-249)||(3372170-3372216)
chr4 (203-249)||(3904718-3904764)
chr4 (203-249)||(6121928-6121974)
chr4 (179-257)||(17344254-17344332)
chr4 (203-249)||(33621845-33621891)
chr4 (183-249)||(41469781-41469847)
chr4 (203-249)||(42797781-42797827)
chr4 (203-249)||(47833660-47833706)
chr4 (203-249)||(48336312-48336358)
chr4 (203-249)||(51894617-51894663)
chr4 (203-249)||(52756724-52756770)
chr4 (203-264)||(7579344-7579405)
chr4 (183-235)||(4780358-4780410)
chr4 (178-226)||(41615748-41615796)
chr4 (183-226)||(25855098-25855141)
chr4 (206-249)||(43900598-43900641)
chr4 (203-249)||(3422109-3422155)
chr4 (220-281)||(17236839-17236901)
chr4 (203-249)||(20538721-20538767)
chr4 (203-249)||(46797774-46797820)
chr4 (203-249)||(53337419-53337465)
chr4 (204-257)||(33698724-33698777)
chr4 (195-227)||(2734196-2734228)
chr4 (195-227)||(48514596-48514628)
[»] chr1 (31 HSPs)
chr1 (203-281)||(16448143-16448221)
chr1 (183-291)||(11989788-11989896)
chr1 (183-257)||(11897095-11897169)
chr1 (183-249)||(17556802-17556868)
chr1 (166-222)||(21537945-21538001)
chr1 (203-303)||(25694314-25694414)
chr1 (178-281)||(1598392-1598493)
chr1 (183-254)||(37552185-37552256)
chr1 (203-249)||(9981696-9981742)
chr1 (203-249)||(14984886-14984932)
chr1 (203-249)||(23278036-23278082)
chr1 (203-249)||(27159393-27159439)
chr1 (203-249)||(31842830-31842876)
chr1 (203-249)||(34042745-34042791)
chr1 (203-249)||(39402001-39402047)
chr1 (203-249)||(44668128-44668174)
chr1 (203-249)||(44955241-44955287)
chr1 (203-249)||(47216734-47216780)
chr1 (159-249)||(47588328-47588418)
chr1 (203-256)||(3739846-3739899)
chr1 (204-249)||(26471101-26471146)
chr1 (180-263)||(12069521-12069604)
chr1 (179-249)||(571556-571626)
chr1 (203-245)||(11795986-11796028)
chr1 (183-249)||(12213489-12213555)
chr1 (203-249)||(12483663-12483709)
chr1 (199-249)||(33668778-33668828)
chr1 (203-249)||(47777516-47777562)
chr1 (6-39)||(31672910-31672943)
chr1 (194-255)||(37918947-37919007)
chr1 (204-249)||(47969744-47969789)
[»] chr6 (22 HSPs)
chr6 (183-287)||(7596992-7597096)
chr6 (183-281)||(6068583-6068681)
chr6 (183-247)||(22896513-22896577)
chr6 (203-302)||(8417828-8417927)
chr6 (203-249)||(2830384-2830430)
chr6 (203-249)||(6330164-6330210)
chr6 (203-249)||(8383004-8383050)
chr6 (203-249)||(9644745-9644791)
chr6 (203-249)||(9650762-9650808)
chr6 (203-249)||(11572180-11572226)
chr6 (203-249)||(13853628-13853674)
chr6 (203-249)||(26602372-26602418)
chr6 (3-39)||(33468394-33468430)
chr6 (180-242)||(3788093-3788155)
chr6 (203-249)||(8099579-8099625)
chr6 (1-39)||(13851747-13851785)
chr6 (203-249)||(28747169-28747215)
chr6 (203-249)||(33052829-33052875)
chr6 (203-249)||(35031036-35031082)
chr6 (205-249)||(6143603-6143647)
chr6 (195-235)||(8437827-8437867)
chr6 (1-41)||(13360382-13360422)
[»] scaffold0009 (1 HSPs)
scaffold0009 (203-249)||(49554-49600)
[»] scaffold0097 (1 HSPs)
scaffold0097 (195-252)||(37928-37985)
[»] scaffold1707 (1 HSPs)
scaffold1707 (203-249)||(1384-1430)
[»] scaffold0204 (1 HSPs)
scaffold0204 (203-249)||(23834-23880)
[»] scaffold0050 (1 HSPs)
scaffold0050 (4-39)||(70289-70324)
[»] scaffold0482 (1 HSPs)
scaffold0482 (203-249)||(12909-12955)
[»] scaffold0464 (1 HSPs)
scaffold0464 (203-249)||(6166-6212)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-39)||(9757-9795)
[»] scaffold0066 (1 HSPs)
scaffold0066 (6-39)||(33378-33411)
[»] scaffold0027 (1 HSPs)
scaffold0027 (204-263)||(13200-13259)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 35904694 - 35904319
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaattacttggtcctttgcattcaatttcataactttttagtctagtatattatcatttttgtatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  35904694 acatataattacactgaattaagttattttttcaaattacttggtccattgcattcaatttcataactttttagtctagtatattatgatctttgtatga 35904595  T
Q  101 aatgtgtgaagaaatgtaaggctttaggtcattgtttatgtgaacatatatcaagattaaaacttaatactctcttggatcttatttattagagaaaatt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  35904594 aatgtgtgaagaaatgtaaggctttgggtcattgtttatgtgagcatatatcaagattaaaacttaatactctcttcggtcttatttattagagaaaatt 35904495  T
Q  201 tagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaacaagatc-agagggattat 299  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||    
T  35904494 tagtcaacaaaagt--atgtatttagttaaaaattcagtccaaatacatcaacttttattaacccgt-ttattcttataaacaagatcaagagggattat 35904398  T
Q  300 tatgggtgaagtaatgtttccatgattgaagccatggggata--ttttatccaaaaatactcatgtccacgtgataatt 376  Q
    |||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  35904397 tatgtgtgaagtaatgtttccatgattgaagccatggggatattttttatccaaaaatactcatgtccacgtgataatt 35904319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 2366353 - 2366434
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacc 264  Q
    ||||||| ||||||| ||  |||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2366353 tatttataagagaaatttgggtcaacaagagttcatgtatttggttaaaatttcagtccaaatacatcaacttttattaacc 2366434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 583084 - 583038
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  583084 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 583038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 9395445 - 9395399
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  9395445 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 9395399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 11795263 - 11795217
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  11795263 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 11795217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 23360037 - 23359991
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  23360037 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 23359991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 36563573 - 36563619
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  36563573 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 36563619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 37148990 - 37149036
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  37148990 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 37149036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 39030588 - 39030642
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||||||||||||||||||||||||||||||    |||||||||| |||||||    
T  39030588 gtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttt 39030642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 41989442 - 41989488
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  41989442 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 41989488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 13033184 - 13033100
Alignment:
Q  165 taatactctcttggatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||| ||  |||| ||||||| ||||||  ||  ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  13033184 taatactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacat 13033100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 20848167 - 20848112
Alignment:
Q  205 caacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttatt 260  Q
    |||||||| || |||||| | ||||||||||||||||||||||||  |||||||||    
T  20848167 caacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttatt 20848112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 6126919 - 6126873
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | |||||||||| |||||||||||||    
T  6126919 gtcaacaaaagttgatgtatctagttaaaaatttagtccaaatacat 6126873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 13103119 - 13103073
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  13103119 gtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacat 13103073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30502398 - 30502436
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  30502398 acatataattacactgaattaagtgattttctcaaatta 30502436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30542741 - 30542779
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  30542741 acatataattacactgaattaagtgattttctcaaatta 30542779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 34252742 - 34252804
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaaccc 265  Q
    |||||||||||||||||||||||||| |||||| |  ||| || ||||||||| | |||||||    
T  34252742 gtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaaccc 34252804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 39290889 - 39290815
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||| ||||||| |  | ||||||||||||||||||| |  ||||||||| | |||||||||||||| ||||    
T  39290889 tatttataagagaaagtcgaatcaacaaaagttaatgtatctaattaaaaatttaatccaaatacatcaattttt 39290815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 12002778 - 12002831
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||| |||||||||||||| ||||| ||||||||||| ||||| ||||| ||||    
T  12002778 tcaataaaagttaatgtatatggtttaaaattcagtctaaatatatcaattttt 12002831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 21576040 - 21575995
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||||| |||||| |  |||||||||||||||||||||||    
T  21576040 tcaacaaaagttgatgtatctaattaaaaattcagtccaaatacat 21575995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 26350386 - 26350431
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||| ||||||| |||||| | ||||||||||||||||||||||||    
T  26350386 tcaataaaagttgatgtatctagttaaaaattcagtccaaatacat 26350431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 36595786 - 36595855
Alignment:
Q  180 tcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| ||||||| ||  |||||||||| || |||||| || |||||||||||||| | ||||||    
T  36595786 tcttatttataagagaaagttaggtcaacaaaaattgatgtatctgattaaaaattcagtctagatacat 36595855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 42324965 - 42324916
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaa 252  Q
    ||||||||||||||||||||||| || |||||| |  |||||||||||||    
T  42324965 gtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaa 42324916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 14325879 - 14325959
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaac 263  Q
    ||||||| ||| |||||||  ||||||||| |||||||||||| || |||||| |||| | ||| ||||| |||| |||||    
T  14325879 tatttataagaaaaaatttgatcaacaaaaattaatgtatttgattcaaaatttagtctagatatatcaaattttgttaac 14325959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 20219522 - 20219582
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacc 264  Q
    ||||||||||||||| |||||| || |||||| |  ||||||| |||||||| ||||||||    
T  20219522 tcaacaaaagttaatatatttgattcaaaatttatgccaaatatatcaacttatattaacc 20219582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 26835315 - 26835283
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    |||||||||||||||| ||||||||||||||||    
T  26835315 gtcaacaaaagttaatatatttggttaaaaatt 26835283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 35549246 - 35549206
Alignment:
Q  217 atgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  35549246 atgtatttggttcaaaatttagtccaaatgcatcaactttt 35549206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 39030656 - 39030624
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggt 227  Q
    |||| ||||||||||||||||||||||||||||    
T  39030656 aaaaattagtcaacaaaagttaatgtatttggt 39030624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 12170409 - 12170491
Alignment:
Q  178 gatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttatt 260  Q
    |||||||||||| ||||||| ||  ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||    
T  12170409 gatcttatttataagagaaacttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattaacttttatt 12170491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 16734898 - 16734824
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||| ||||||| || ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  16734898 tatttataagagaaagttgagtaaacaaaagttgatgtatttggttaaaaattcagtccagatacatcaactttt 16734824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 41453149 - 41453097
Alignment:
Q  208 caaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttatt 260  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||||||||    
T  41453149 caaaagttgatgtattttgttaaaaattcagtccaaatacattaacttttatt 41453097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 38917557 - 38917614
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttatt 260  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||  |||||||||    
T  38917557 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttatt 38917614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 35311277 - 35311237
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  35311277 aaaatttagtcaacaaaagttaatgtatttggttcaaaatt 35311237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 3055653 - 3055607
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3055653 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 3055607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 6648554 - 6648600
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  6648554 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 6648600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 9047790 - 9047836
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  9047790 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 9047836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 12337972 - 12338018
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  12337972 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 12338018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 13197745 - 13197791
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  13197745 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 13197791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 15372321 - 15372275
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  15372321 gtcaacaaaagttgatgtatctcgttaaaaattcagtccaaatacat 15372275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 15896937 - 15896891
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  15896937 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 15896891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 16243818 - 16243864
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  16243818 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 16243864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 37990048 - 37990094
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  37990048 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 37990094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 41478674 - 41478720
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  41478674 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 41478720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 41492911 - 41492977
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||| ||  ||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  41492911 tatttataagagaaatttgggtcaacaaaagttgatgtatctagttaaaaattctgtccaaatacat 41492977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 44397642 - 44397596
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  44397642 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 44397596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 44398781 - 44398735
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  44398781 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 44398735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 44804593 - 44804659
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||  || ||| |||||||||| |||||| | ||||||||||||||||||||||||    
T  44804593 tatttataagagaattttaagttaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 44804659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 13344578 - 13344533
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||||| |||||| | ||||||||||||||||||||||||    
T  13344578 tcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 13344533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 16180528 - 16180488
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  16180528 aaaatttggtcaacaaaagttaatgtatttggttcaaaatt 16180488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 31469096 - 31469128
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    |||||||||||||||||||||||||||||||||    
T  31469096 gtcaacaaaagttaatgtatttggttaaaaatt 31469128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 27280058 - 27279995
Alignment:
Q  195 aaaatttag-tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||||| ||||||||||||||||||| |||||||||  | || ||| ||||||||||||||    
T  27280058 aaaatttaggtcaacaaaagttaatgtatctggttaaaacattagaccagatacatcaactttt 27279995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 43398920 - 43398861
Alignment:
Q  206 aacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaaccc 265  Q
    ||||||||||||||||||||||| ||||||    |||||||||||||||| |||| ||||    
T  43398920 aacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgaccc 43398861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 45294427 - 45294365
Alignment:
Q  195 aaaatttag-tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||||| |||||||||||||| ||||||||||||||| | ||||| ||||||| |||||||    
T  45294427 aaaatttaggtcaacaaaagttaaagtatttggttaaaaaattagtcc-aatacattaactttt 45294365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 4683971 - 4684013
Alignment:
Q  207 acaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  4683971 acaaaagttgatgtatctagttaaaaattcagtccaaatacat 4684013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 13724137 - 13724191
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||||||||| ||||||||||||||||| |  | ||| ||||||||||||||    
T  13724137 gtcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaactttt 13724191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 28677958 - 28677920
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  28677958 acatataattacactgaattatgtgattttttcaaatta 28677920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 30099197 - 30099263
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||||  ||  ||||||||||||| |||||| |  ||||||||||| |||||||||||    
T  30099197 tatttattagagaattttgggtcaacaaaagttgatgtatctaattaaaaattcaatccaaatacat 30099263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 12320267 - 12320214
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttt 256  Q
    ||||||||||  |||||||||||||||| | || || |||||||||||||||||    
T  12320267 gtcaacaaaatgtaatgtatttggttaagagtttagaccaaatacatcaacttt 12320214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 7932760 - 7932800
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  7932760 aaaaattagtcaacaaaagttaacgtatttggttcaaaatt 7932800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 10459291 - 10459323
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    |||||||||||||||||||||||||| ||||||    
T  10459291 gtcaacaaaagttaatgtatttggttcaaaatt 10459323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 19924321 - 19924381
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactt 255  Q
    |||| |||||||| |||||||||||||| ||||| ||||||    ||||||||||||||||    
T  19924321 aaaagttagtcaataaaagttaatgtatatggttcaaaatttgtaccaaatacatcaactt 19924381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 35990606 - 35990558
Alignment:
Q  209 aaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||| ||||||| |||||||||||| |||| | ||||||||||||||    
T  35990606 aaaagtcaatgtatgtggttaaaaatttagtctacatacatcaactttt 35990558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 41374622 - 41374562
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactt 255  Q
    |||| ||||||||| |||||||||||||||| || ||| || |  ||||||||||||||||    
T  41374622 aaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaactt 41374562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 1 - 74
Alignment:
Q  184 atttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||| ||||||| |  |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  1 atttataagagaaagtcgagtcaacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaactttt 74  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 17007027 - 17006914
Alignment:
Q  182 ttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaa 281  Q
    |||||||| ||||||| ||||||||| ||||||| |||||| || |||| ||||||||||| || ||||||||||| || ||||  |||| |||||||||    
T  17007027 ttatttataagagaaattttagtcaataaaagttgatgtatctgattaacaattcagtccagatccatcaacttttgttgacccaactttctcttataaa 17006928  T
Q  282 caagatcagaggga 295  Q
     | |||| ||||||    
T  17006927 taggatcggaggga 17006914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 17570220 - 17570333
Alignment:
Q  182 ttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaa 281  Q
    |||||||| ||||||| ||||||||| ||||||| |||||| || |||| ||||||||||| || ||||||||||| || ||||  |||| |||||||||    
T  17570220 ttatttataagagaaattttagtcaataaaagttgatgtatctgattaacaattcagtccagatccatcaacttttgttgacccaactttctcttataaa 17570319  T
Q  282 caagatcagaggga 295  Q
     | |||| ||||||    
T  17570320 taggatcggaggga 17570333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 8587288 - 8587211
Alignment:
Q  180 tcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||||||| ||||||| || |||||| ||||||| |||||| | |||||||||| |||| ||||||||||||||||    
T  8587288 tcttatttataagagaaacttgagtcaataaaagttgatgtatctagttaaaaatttagtcaaaatacatcaactttt 8587211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 27422323 - 27422239
Alignment:
Q  165 taatactctcttggatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||| ||| | || ||||||| ||||||| ||  |||||||||| | ||||||| ||||||||||||||||||||||||||    
T  27422323 taatactcccttcggtcctatttataagagaaatttgggtcaacaaaaatgaatgtatctggttaaaaattcagtccaaatacat 27422239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 12343155 - 12343221
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||  ||| ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  12343155 tatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 12343221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 25601035 - 25601081
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||    
T  25601035 gtcaacaaaagttaatgtatctagttaaaaattcagtccaaatacat 25601081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 43199369 - 43199435
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||  ||| ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  43199369 tatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 43199435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 28463699 - 28463628
Alignment:
Q  210 aaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaa 281  Q
    |||||| || ||| ||||| |||||||||||||||||||||||||||| || ||||  |||| |||||||||    
T  28463699 aaagttgatatatctggttcaaaattcagtccaaatacatcaacttttgttgacccaactttctcttataaa 28463628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 54647 - 54693
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  54647 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 54693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 2890197 - 2890243
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  2890197 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 2890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 3304313 - 3304359
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3304313 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 3304359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 6552750 - 6552704
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  6552750 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 6552704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 7785813 - 7785859
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  7785813 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 7785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 12763689 - 12763735
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  12763689 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 12763735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 31654708 - 31654662
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  31654708 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 31654662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 33289296 - 33289342
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  33289296 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 33289342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 39571238 - 39571284
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  39571238 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 39571284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 13578952 - 13578895
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttatt 260  Q
    ||||||||||||| |||||| | |||||||||||||| |||||||||  |||||||||    
T  13578952 gtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttatt 13578895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 13246804 - 13246883
Alignment:
Q  178 gatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||| ||||||| ||||||| ||   ||||||||| | ||||||||||  ||||||||||||||| |||||| |||||||    
T  13246804 gatcctatttataagagaaatttggatcaacaaaaatgaatgtatttgactaaaaattcagtccagatacatgaactttt 13246883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4611583 - 4611545
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  4611583 acatataattacactgaattatgttattttctcaaatta 4611545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 7012265 - 7012223
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaata 246  Q
    |||||||||||| |||||| | |||||||||||||||||||||    
T  7012265 tcaacaaaagttgatgtatctagttaaaaattcagtccaaata 7012223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 7805734 - 7805780
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||| |||||||| |||||| | ||||||||||||||||||||||||    
T  7805734 gtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacat 7805780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 15888387 - 15888433
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | |||||||||||| |||||||||||    
T  15888387 gtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacat 15888433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 24692014 - 24692091
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaa 281  Q
    ||||||||||||| || ||| ||||||||| |||||| || |||||||||||||| || |||   ||||||||||||||    
T  24692014 gtcaacaaaagttgatatatctggttaaaa-ttcagttcagatacatcaacttttgttgacctaactttttcttataaa 24692091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 32114510 - 32114556
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| || |||||| | ||||||||||||||||||||||||    
T  32114510 gtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacat 32114556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 32211398 - 32211444
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| || |||||| | ||||||||||||||||||||||||    
T  32211398 gtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacat 32211444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 44498222 - 44498268
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||| ||||||| |||||| | ||||||||||||||||||||||||    
T  44498222 gtcaataaaagttgatgtatctagttaaaaattcagtccaaatacat 44498268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 39591274 - 39591233
Alignment:
Q  216 aatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||| |||||||||||| |||||| ||||||||||||||    
T  39591274 aatgtatgtggttaaaaatttagtccagatacatcaactttt 39591233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 41450889 - 41450945
Alignment:
Q  179 atcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    ||||||||||| |||||||||| ||| |||||||||| |||||  ||||| ||||||    
T  41450889 atcttatttataagagaaaattaagtaaacaaaagttgatgtacgtggtttaaaatt 41450945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 33942942 - 33943021
Alignment:
Q  178 gatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||| ||||||| ||||||| ||  ||||||||||||| |||||| | |||||||||||||||||||||||| |||||||    
T  33942942 gatcctatttataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattaactttt 33943021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 8437540 - 8437463
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttatt 260  Q
    ||||||| ||||||  || |||||||||||||| |||||| | ||||||||||||||||||||||||  |||||||||    
T  8437540 tatttataagagaattttgagtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttatt 8437463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 4238709 - 4238643
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||  ||| ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  4238709 tatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 4238643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 9213631 - 9213557
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||||||||||| ||  |||||||||| || ||||||||||||| ||| | |||||| ||||||||||||||    
T  9213631 tatttattagagaaatttaggtcaacaaaaattgatgtatttggttataaaattagtccagatacatcaactttt 9213557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 38964507 - 38964441
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||  ||| ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  38964507 tatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 38964441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 40691031 - 40691092
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacc 264  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||  |||||| ||||||    
T  40691031 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttaacc 40691092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 43323141 - 43323077
Alignment:
Q  217 atgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaa 281  Q
    ||||||||||||||||||| | ||||||||||||||||||| || ||||   |||||||||||||    
T  43323141 atgtatttggttaaaaatttaatccaaatacatcaacttttgttgacccaattttttcttataaa 43323077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 26019490 - 26019592
Alignment:
Q  178 gatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttctta 277  Q
    |||| ||||||| ||||||||||| |||||| |||||| |||||| ||||| |||||| |||| | |||||| ||| ||| |||||||  |||| |||||    
T  26019490 gatcctatttataagagaaaatttggtcaaccaaagtttatgtatctggttcaaaatttagtcaagatacattaac-tttgttaacccaactttctctta 26019588  T
Q  278 taaa 281  Q
    ||||    
T  26019589 taaa 26019592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 8092696 - 8092630
Alignment:
Q  190 tagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttt 256  Q
    |||||||| ||| ||||||| ||||| |||||| |||||||||||| |||| | |||||||||||||    
T  8092696 tagagaaagtttggtcaacagaagttgatgtatctggttaaaaatttagtcgagatacatcaacttt 8092630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 8817421 - 8817467
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  8817421 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 8817467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 10298074 - 10298028
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  10298074 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 10298028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 17653807 - 17653761
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  17653807 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 17653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 19557087 - 19557133
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  19557087 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 19557133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 22722026 - 22721980
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  22722026 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 22721980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 34080065 - 34080111
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  34080065 gtcaacaaaagttgatgtatcttgttaaaaattcagtccaaatacat 34080111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 37509016 - 37508970
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  37509016 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 37508970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 42170381 - 42170427
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||||    
T  42170381 gtcaacaaaagttgatgtatctggttaaaaattcactccaaatacat 42170427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 44785431 - 44785477
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  44785431 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 44785477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 48340492 - 48340446
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  48340492 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 48340446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 49823416 - 49823462
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  49823416 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 49823462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 32221563 - 32221506
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaa 252  Q
    |||| ||||||||||||||||||||||||||||| ||||||    |||||||||||||    
T  32221563 aaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaa 32221506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 36095716 - 36095761
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||||| |||||| | ||||||||||||||||||||||||    
T  36095716 tcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 36095761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 8951945 - 8951985
Alignment:
Q  217 atgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  8951945 atgtattttgttaaaaattcagtccaaatacattaactttt 8951985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 32988414 - 32988346
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaac 263  Q
    |||||| |||| ||||||||||| ||||||||| |||||||  || |||||| ||||| ||||||||||    
T  32988414 aaaattaagtctacaaaagttaacgtatttggtcaaaaatttggttcaaatatatcaatttttattaac 32988346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 2787867 - 2787913
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||| |||||||| |||||| | ||||||||||||||||||||||||    
T  2787867 gtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacat 2787913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 6013371 - 6013417
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||||| ||| ||| | ||||||||||||||||||||||||    
T  6013371 gtcaacaaaagtaaatttatctagttaaaaattcagtccaaatacat 6013417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7928499 - 7928461
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  7928499 acatataattacactgaattatgtgattttttcaaatta 7928461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 9111529 - 9111575
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | |||||||||||||| |||||||||    
T  9111529 gtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacat 9111575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16192760 - 16192798
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  16192760 acatataattacactgaattatgttattttctcaaatta 16192798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 21295361 - 21295407
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  21295361 gtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacat 21295407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 42507390 - 42507436
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||| ||||||||||||||||||||    
T  42507390 gtcaacaaaagttgatgtatctagttcaaaattcagtccaaatacat 42507436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 46208125 - 46208079
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  46208125 gtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacat 46208079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 51406768 - 51406722
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| || |||||| | ||||||||||||||||||||||||    
T  51406768 gtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacat 51406722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 10449586 - 10449538
Alignment:
Q  209 aaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||| ||||||| ||||||| |||| |||||| ||||||||||||||    
T  10449586 aaaagtcaatgtatgtggttaagaatttagtccatatacatcaactttt 10449538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 40840134 - 40840200
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||| ||| ||||||||||||| ||||| || ||||||||||||||||||||||||    
T  40840134 tatttataagagaaatttttgtcaacaaaagttgatgtacttagttaaaaattcagtccaaatacat 40840200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 300
Target Start/End: Complemental strand, 9575524 - 9575407
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaac 282  Q
    ||||||| ||||||| ||| |||||||||| || |||||| | ||||||||||||||| |||||| | ||||||| || ||||  |||| ||||| |||     
T  9575524 tatttataagagaaagtttggtcaacaaaacttgatgtatctagttaaaaattcagtctaaatacgttaacttttgttgacccaactttctcttacaaat 9575425  T
Q  283 aagatcagagggattatt 300  Q
    | || |||||||| ||||    
T  9575424 aggaccagagggagtatt 9575407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 295
Target Start/End: Original strand, 7269420 - 7269532
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaac 282  Q
    ||||||| ||||||| ||  || |||||||||| ||| || ||||||||||||||||  | ||||||||| |||| || ||||  ||||||||||||||     
T  7269420 tatttataagagaaagttgggttaacaaaagttgatgcatctggttaaaaattcagtttagatacatcaatttttgttgacccaactttttcttataaat 7269519  T
Q  283 aagatcagaggga 295  Q
    |||| | ||||||    
T  7269520 aagaccggaggga 7269532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 1565764 - 1565810
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  1565764 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 1565810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 1738482 - 1738528
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  1738482 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 1738528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 7240844 - 7240798
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  7240844 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 7240798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 9268851 - 9268805
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  9268851 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 9268805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 31319434 - 31319480
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  31319434 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 31319480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 38063948 - 38063994
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  38063948 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 38063994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 46840955 - 46840909
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  46840955 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 46840909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 16866486 - 16866429
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttatt 260  Q
    |||||||||||||||||||||||||||||||||    || ||||||| ||||||||||    
T  16866486 gtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttatt 16866429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 36583528 - 36583444
Alignment:
Q  165 taatactctcttggatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||| ||  |||| ||||||| ||||||  ||  ||||||||||||| |||||| | |||||||||| |||||||||||||    
T  36583528 taatactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattaagtccaaatacat 36583444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 94328 - 94399
Alignment:
Q  178 gatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||| ||||||| ||||||  ||  ||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  94328 gatcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattctgtccaaatacat 94399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 7482320 - 7482274
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | |||||||||||||| |||||||||    
T  7482320 gtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacat 7482274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17307942 - 17307904
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  17307942 acatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 22285794 - 22285748
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  22285794 gtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacat 22285748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 23314174 - 23314220
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| || ||| | ||||||||||||||||||||||||    
T  23314174 gtcaacaaaagttgatatatctagttaaaaattcagtccaaatacat 23314220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 33418471 - 33418425
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  33418471 gtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacat 33418425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 36016231 - 36016277
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  36016231 gtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacat 36016277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 38441555 - 38441509
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | |||||||||||||| |||||||||    
T  38441555 gtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacat 38441509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 14706807 - 14706730
Alignment:
Q  187 tattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacc 264  Q
    ||||| ||||||||  ||||||||||||| || ||| || |||| |||||| | || |||||||||||||| ||||||    
T  14706807 tattacagaaaattcggtcaacaaaagttgatatatctgattaacaattcaattcagatacatcaacttttgttaacc 14706730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 6803324 - 6803364
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    ||||||| |||||||||||||||||||||| ||| ||||||    
T  6803324 aaaatttggtcaacaaaagttaatgtatttagtttaaaatt 6803364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 41615691 - 41615765
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||| ||||||||||   |||||||||||| |||||||| |||||||||| ||||||||||||| |||||||    
T  41615691 tatttataagagaaaattggatcaacaaaagttgatgtatttagttaaaaattaagtccaaatacattaactttt 41615765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 5987010 - 5986925
Alignment:
Q  164 ttaatactctcttggatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||  | || ||||||| ||||||  ||  ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  5987010 ttaatactctctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacat 5986925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 24704490 - 24704419
Alignment:
Q  178 gatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||| ||||||| ||||||  ||  |||||||||||||||||||| | ||||||||||||||||||||||||    
T  24704490 gatcctatttataagagaattttgggtcaacaaaagttaatgtatctagttaaaaattcagtccaaatacat 24704419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 25855174 - 25855124
Alignment:
Q  207 acaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  25855174 acaaaagtcgatgtatttggttaaaaattcagtccaaatacattaactttt 25855124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 47838632 - 47838698
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||  ||| ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  47838632 tatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 47838698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 50430453 - 50430507
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||||||| || |||||| |||||||||||||| |||||||||||||||||||    
T  50430453 gtcaacaaaaattgatgtatctggttaaaaattcaatccaaatacatcaactttt 50430507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 3993094 - 3993025
Alignment:
Q  180 tcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| ||||||  ||  ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3993094 tcttatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 3993025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 45725971 - 45725904
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatc 250  Q
    ||||||| ||||||| ||| ||||||||||||||| |||||| ||||| |||| |||| |||||||||    
T  45725971 tatttataagagaaagtttcgtcaacaaaagttaacgtatttagttaagaatttagtctaaatacatc 45725904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 3372216 - 3372170
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3372216 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 3372170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 3904718 - 3904764
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| || |||||||| ||||||||||||||||||||||||    
T  3904718 gtcaacaaaaattgatgtatttagttaaaaattcagtccaaatacat 3904764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 6121928 - 6121974
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  6121928 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 6121974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 17344332 - 17344254
Alignment:
Q  179 atcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||||||| ||||||| ||   |||||||||||| ||||||  | ||||||||||||| || ||||||||||||||    
T  17344332 atcttatttataagagaaatttggatcaacaaaagttgatgtatccgattaaaaattcagttcagatacatcaactttt 17344254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 33621891 - 33621845
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  33621891 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 33621845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 41469781 - 41469847
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||  ||| ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  41469781 tatttataagagaatttttggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacat 41469847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 42797827 - 42797781
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  42797827 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 42797781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 47833706 - 47833660
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  47833706 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 47833660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 48336358 - 48336312
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  48336358 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 48336312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 51894617 - 51894663
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  51894617 gtcaacaaaagttgatgtatctggttaaaaattcagtccaaaaacat 51894663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 52756770 - 52756724
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  52756770 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 52756724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 7579405 - 7579344
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacc 264  Q
    ||||||||||||| |||||| | |||||||||||| |||||||||||  |||||| ||||||    
T  7579405 gtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttgttaacc 7579344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 4780410 - 4780358
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    ||||||| ||||||| ||| |||||||||||||||||||| || |||||||||    
T  4780410 tatttataagagaaattttggtcaacaaaagttaatgtatctgattaaaaatt 4780358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 41615796 - 41615748
Alignment:
Q  178 gatcttatttattagagaaaatttagtcaacaaaagttaatgtatttgg 226  Q
    |||| ||||||| ||||||||||  ||||||||||||||||||||||||    
T  41615796 gatcctatttataagagaaaattaggtcaacaaaagttaatgtatttgg 41615748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 25855098 - 25855141
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttgg 226  Q
    ||||||| ||||||| || |||||||||||||||||||||||||    
T  25855098 tatttatgagagaaagttgagtcaacaaaagttaatgtatttgg 25855141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 43900641 - 43900598
Alignment:
Q  206 aacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| |||||| | ||||||||||||||||||||||||    
T  43900641 aacaaaagttgatgtatctagttaaaaattcagtccaaatacat 43900598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 3422155 - 3422109
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | |||||||||||||| |||||||||    
T  3422155 gtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacat 3422109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 17236839 - 17236901
Alignment:
Q  220 tatttggttaaaaattcagtc-caaatacatcaacttttattaacccgtctttttcttataaa 281  Q
    |||||||||||||||||||||  |||||||||||||||| || ||||   |||||||||||||    
T  17236839 tatttggttaaaaattcagtctaaaatacatcaacttttgttgacccaaatttttcttataaa 17236901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 20538721 - 20538767
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| || |||||| | ||||||||||||||||||||||||    
T  20538721 gtcaacaaaatttgatgtatctagttaaaaattcagtccaaatacat 20538767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 46797820 - 46797774
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| || ||| | ||||||||||||||||||||||||    
T  46797820 gtcaacaaaagttgatatatctagttaaaaattcagtccaaatacat 46797774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 53337465 - 53337419
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||| ||||||| |||||| | ||||||||||||||||||||||||    
T  53337465 gtcaataaaagttgatgtatctagttaaaaattcagtccaaatacat 53337419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 33698777 - 33698724
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    |||||||||||| |||||||||||  ||||||  ||| ||||||||||||||||    
T  33698777 tcaacaaaagtttatgtatttggtctaaaattttgtcaaaatacatcaactttt 33698724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 2734196 - 2734228
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggt 227  Q
    |||| ||||||||||||||||||||||||||||    
T  2734196 aaaaattagtcaacaaaagttaatgtatttggt 2734228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 48514628 - 48514596
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggt 227  Q
    |||| ||||||||||||||||||||||||||||    
T  48514628 aaaaattagtcaacaaaagttaatgtatttggt 48514596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 16448143 - 16448221
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaa 281  Q
    ||||||||||||| |||||| ||||| ||||||||||||| |||||||||||||| || ||||  |||| |||||||||    
T  16448143 gtcaacaaaagtttatgtatctggttcaaaattcagtccagatacatcaacttttgttgacccaactttctcttataaa 16448221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 11989896 - 11989788
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaac 282  Q
    ||||||| | ||||| || |||||| |||| || |||||||||||||||||||||||||||||| || |  |||| || ||||  |||| |||||||||     
T  11989896 tatttataaaagaaatttgagtcaataaaaattgatgtatttggttaaaaattcagtccaaatatattagtttttgttgacccaactttctcttataaat 11989797  T
Q  283 aagatcaga 291  Q
    |||||||||    
T  11989796 aagatcaga 11989788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 11897169 - 11897095
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactttt 257  Q
    ||||||| ||||||| ||  ||||||||||||| ||||||  ||||||||||||||| || ||||||||||||||    
T  11897169 tatttataagagaaatttgggtcaacaaaagttgatgtatccggttaaaaattcagttcagatacatcaactttt 11897095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 17556868 - 17556802
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||| ||||||| ||  ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  17556868 tatttataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 17556802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 21538001 - 21537945
Alignment:
Q  166 aatactctcttggatcttatttattagagaaaatttagtcaacaaaagttaatgtat 222  Q
    ||||||||||  |||||||||||| |||||||||| |||||||||||||| ||||||    
T  21538001 aatactctctccgatcttatttataagagaaaattgagtcaacaaaagttgatgtat 21537945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 303
Target Start/End: Complemental strand, 25694414 - 25694314
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaacaagatcagagggattattat 302  Q
    ||||||||||||| |||||| | |||||||||||| |||||||||||  ||||||||| | |    ||| ||||||||| | ||||||||||| ||||||    
T  25694414 gtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttattgatctaaatttctcttataaataggatcagagggagtattat 25694315  T
Q  303 g 303  Q
    |    
T  25694314 g 25694314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 1598392 - 1598493
Alignment:
Q  178 gatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttctta 277  Q
    |||| ||||||| ||||||| | | |||||||||| || |||||| || |||||||||||||||||||||||||| ||||||| |  |  ||||||||||    
T  1598392 gatcctatttataagagaaa-tatggtcaacaaaaattgatgtatatg-ttaaaaattcagtccaaatacatcaatttttattgattcaactttttctta 1598489  T
Q  278 taaa 281  Q
    ||||    
T  1598490 taaa 1598493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 37552256 - 37552185
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaact 254  Q
    ||||||| ||||||| ||  |||||||||| | ||||||| ||||||||||||||||||| |||||| ||||    
T  37552256 tatttataagagaaatttgggtcaacaaaaatgaatgtatctggttaaaaattcagtccagatacatgaact 37552185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 9981742 - 9981696
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  9981742 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 9981696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 14984932 - 14984886
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  14984932 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 14984886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 23278036 - 23278082
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  23278036 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 23278082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 27159393 - 27159439
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  27159393 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 27159439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 31842830 - 31842876
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  31842830 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 31842876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 34042791 - 34042745
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  34042791 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 34042745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 39402001 - 39402047
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  39402001 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 39402047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 44668128 - 44668174
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  44668128 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 44668174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 44955241 - 44955287
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  44955241 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 44955287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 47216734 - 47216780
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  47216734 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 47216780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 47588328 - 47588418
Alignment:
Q  159 aaaacttaatactctcttggatcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||| ||||||||| ||| | | |||||||| ||||||  ||  ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  47588328 aaaaattaatactcccttcggttttatttataagagaattttgggtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacat 47588418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 3739899 - 3739846
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttt 256  Q
    |||||||||||||||||||||||||||||||||    |||||||||| ||||||    
T  3739899 gtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttt 3739846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 26471101 - 26471146
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||||| |||||| | ||||||||||||||||||||||||    
T  26471101 tcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 26471146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 12069604 - 12069521
Alignment:
Q  180 tcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaac 263  Q
    |||||||||| |||||||||| |||  | ||||||| || |||  |||||||||||||||| |||||||| || |||| |||||    
T  12069604 tcttatttataagagaaaattgagttgataaaagttgatttatcaggttaaaaattcagtctaaatacataaatttttgttaac 12069521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 571626 - 571556
Alignment:
Q  179 atcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||||  ||||| ||||  ||||||||||||||||||  | ||| ||||||||||| ||||||||    
T  571626 atcttatttataggagaatatttgatcaacaaaagttaatgtacctagttcaaaattcagtctaaatacat 571556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 11796028 - 11795986
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaat 245  Q
    ||||||||||||| |||||| | ||||||||||||||||||||    
T  11796028 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaat 11795986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 12213489 - 12213555
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||||| ||  |||||||||| || || ||||| |||||||||||| || ||||||||    
T  12213489 tatttattagagaaacttgggtcaacaaaaattgatttatttagttaaaaattcaatctaaatacat 12213555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 12483663 - 12483709
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||||| ||| ||||||||||| ||||||||    
T  12483663 gtcaacaaaagttgatgtatttagttcaaaattcagtctaaatacat 12483709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 33668828 - 33668778
Alignment:
Q  199 tttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||||  ||||| |||||||||||||||||||| | ||||||    
T  33668828 tttagtcaacaaaaagtaatgcatttggttaaaaattcagtctagatacat 33668778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 47777516 - 47777562
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||| ||||||||||||||||||||    
T  47777516 gtcaacaaaagttgatgtatctagttcaaaattcagtccaaatacat 47777562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 31672910 - 31672943
Alignment:
Q  6 taattacactgaattaagttattttttcaaatta 39  Q
    ||||||||||||||||||| ||||||||||||||    
T  31672910 taattacactgaattaagtgattttttcaaatta 31672943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 37919007 - 37918947
Alignment:
Q  194 gaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaactt 255  Q
    |||||||| |||||||||||| ||||||||||||| |||||| |   |||||||||||||||    
T  37919007 gaaaattt-gtcaacaaaagtgaatgtatttggtttaaaatttatatcaaatacatcaactt 37918947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 47969789 - 47969744
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||||| |||||| | ||||||||||||||| ||||||||    
T  47969789 tcaacaaaagttgatgtatctagttaaaaattcagtctaaatacat 47969744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 7596992 - 7597096
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaac 282  Q
    |||||||  |||||| || |||||| ||||||| |||||||| |||||||||||||| |  |||||||||||||| ||||| |  |||| |||||||||     
T  7596992 tatttataggagaaatttgagtcaataaaagttgatgtatttagttaaaaattcagttcggatacatcaacttttgttaacacaactttctcttataaat 7597091  T
Q  283 aagat 287  Q
    |||||    
T  7597092 aagat 7597096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 6068681 - 6068583
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaa 281  Q
    ||||||| ||||||  || |||||||||||||| |||||| | |||||||||||| |||||||||||  ||||||||| |||    |||||||||||||    
T  6068681 tatttataagagaattttgagtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttattgacctaaatttttcttataaa 6068583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 22896577 - 22896513
Alignment:
Q  183 tatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatac 247  Q
    ||||||| ||||||  ||| ||||||||||||| |||||| | ||||||||||||||||||||||    
T  22896577 tatttataagagaattttttgtcaacaaaagttgatgtatctagttaaaaattcagtccaaatac 22896513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 8417828 - 8417927
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaacttttattaacccgtctttttcttataaacaagatcagagggattattat 302  Q
    ||||||||||||| |||||| | |||||||||||| |||||||||||  |||||| || |||    ||| ||||||||| |||| |||||||| ||||||    
T  8417828 gtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttgttgacctaaatttctcttataaataagaccagagggagtattat 8417927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 2830430 - 2830384
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  2830430 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 2830384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 6330210 - 6330164
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  6330210 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 6330164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 8383004 - 8383050
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  8383004 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 8383050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 9644791 - 9644745
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  9644791 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 9644745  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 9650808 - 9650762
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  9650808 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 9650762  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 11572180 - 11572226
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  11572180 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 11572226  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 13853628 - 13853674
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  13853628 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 13853674  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 26602418 - 26602372
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  26602418 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 26602372  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 33468394 - 33468430
Alignment:
Q  3 atataattacactgaattaagttattttttcaaatta 39  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33468394 atataattacattgaattaagttattttttcaaatta 33468430  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 3788155 - 3788093
Alignment:
Q  180 tcttatttattagagaaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtcca 242  Q
    |||||||||| ||| ||| ||  ||||||||||||| |||||||| ||||| |||||||||||    
T  3788155 tcttatttataagataaatttaggtcaacaaaagttgatgtatttagttaacaattcagtcca 3788093  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 8099625 - 8099579
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | |||||||||||| |||||||||||    
T  8099625 gtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacat 8099579  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13851785 - 13851747
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  13851785 acatataattacactgaattacgttattttctcaaatta 13851747  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 28747169 - 28747215
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| |  |||||||||||||||||||||||    
T  28747169 gtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacat 28747215  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 33052829 - 33052875
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||| ||||||| |||||| | ||||||||||||||||||||||||    
T  33052829 gtcaataaaagttgatgtatctagttaaaaattcagtccaaatacat 33052875  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 35031036 - 35031082
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||||||||| || |||||| | ||||||||||||||||||||||||    
T  35031036 gtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacat 35031082  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 6143647 - 6143603
Alignment:
Q  205 caacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||| |||||| | |||||||||||| |||||||||||    
T  6143647 caacaaaagttgatgtatctagttaaaaattcaatccaaatacat 6143603  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 8437867 - 8437827
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaatt 235  Q
    |||||||||||||||||| |||||||||||| || ||||||    
T  8437867 aaaatttagtcaacaaaaattaatgtatttgattcaaaatt 8437827  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13360382 - 13360422
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaattact 41  Q
    ||||||||||||||||||||| || ||||| ||||||||||    
T  13360382 acatataattacactgaattatgtgattttctcaaattact 13360422  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 49600 - 49554
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  49600 gtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacat 49554  T

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Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 37928 - 37985
Alignment:
Q  195 aaaatttagtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacatcaa 252  Q
    |||| ||||||||||||||||||||||||||||| |||||| |  |||||||||||||    
T  37928 aaaaattagtcaacaaaagttaatgtatttggtttaaaatttataccaaatacatcaa 37985  T

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Target: scaffold1707 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 1430 - 1384
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  1430 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 1384  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 23880 - 23834
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  23880 gtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 23834  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 70324 - 70289
Alignment:
Q  4 tataattacactgaattaagttattttttcaaatta 39  Q
    |||||||||||||||||| |||||||||||||||||    
T  70324 tataattacactgaattatgttattttttcaaatta 70289  T

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Target: scaffold0482 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 12955 - 12909
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    |||| |||||||| |||||| | ||||||||||||||||||||||||    
T  12955 gtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacat 12909  T

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Target: scaffold0464 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 6166 - 6212
Alignment:
Q  203 gtcaacaaaagttaatgtatttggttaaaaattcagtccaaatacat 249  Q
    ||||||||||||| |||||| | ||||||||||||||||| ||||||    
T  6166 gtcaacaaaagttgatgtatctagttaaaaattcagtccacatacat 6212  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9757 - 9795
Alignment:
Q  1 acatataattacactgaattaagttattttttcaaatta 39  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  9757 acatataattacactgaattaagtgattttctcaaatta 9795  T

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Target: scaffold0066 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 33378 - 33411
Alignment:
Q  6 taattacactgaattaagttattttttcaaatta 39  Q
    |||||||||||||||| |||||||||||||||||    
T  33378 taattacactgaattatgttattttttcaaatta 33411  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 13200 - 13259
Alignment:
Q  204 tcaacaaaagttaatgtatttggttaaaaattcagtccaa-atacatcaacttttattaac 263  Q
    ||||||||||||||||||||||||| ||||||  || ||| |||||||||||| |||||||    
T  13200 tcaacaaaagttaatgtatttggtttaaaatt-tgtacaagatacatcaacttatattaac 13259  T

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