View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_41 (Length: 386)

Name: NF3223_low_41
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_41
NF3223_low_41
[»] chr5 (5 HSPs)
chr5 (1-371)||(8820750-8821120)
chr5 (50-162)||(28586685-28586797)
chr5 (66-158)||(32172708-32172800)
chr5 (65-111)||(38047849-38047895)
chr5 (65-113)||(40499694-40499742)
[»] chr2 (9 HSPs)
chr2 (27-162)||(15120198-15120334)
chr2 (78-162)||(9996805-9996889)
chr2 (123-160)||(1633421-1633458)
chr2 (123-160)||(5043481-5043518)
chr2 (69-150)||(25609854-25609935)
chr2 (50-111)||(32821848-32821909)
chr2 (78-150)||(16503420-16503492)
chr2 (78-162)||(22878165-22878249)
chr2 (123-163)||(43259947-43259987)
[»] chr3 (8 HSPs)
chr3 (26-150)||(37273148-37273273)
chr3 (78-162)||(49845459-49845543)
chr3 (57-149)||(31010448-31010540)
chr3 (95-163)||(45590735-45590803)
chr3 (123-166)||(584158-584201)
chr3 (26-91)||(16790369-16790434)
chr3 (68-162)||(21872214-21872308)
chr3 (123-163)||(24684740-24684780)
[»] chr8 (8 HSPs)
chr8 (50-160)||(4055537-4055647)
chr8 (123-169)||(18331826-18331872)
chr8 (13-75)||(39866740-39866803)
chr8 (50-111)||(14949905-14949966)
chr8 (123-162)||(43368619-43368658)
chr8 (124-162)||(9700114-9700152)
chr8 (96-166)||(14926897-14926967)
chr8 (65-117)||(30987955-30988007)
[»] chr6 (8 HSPs)
chr6 (78-162)||(2460070-2460154)
chr6 (123-167)||(32205927-32205971)
chr6 (49-112)||(9027616-9027679)
chr6 (26-108)||(10616514-10616597)
chr6 (65-111)||(32917251-32917297)
chr6 (123-160)||(12111079-12111116)
chr6 (123-164)||(35070384-35070425)
chr6 (123-171)||(835171-835219)
[»] chr4 (7 HSPs)
chr4 (78-162)||(27123271-27123355)
chr4 (68-167)||(6987655-6987754)
chr4 (26-168)||(14011248-14011391)
chr4 (71-166)||(25717653-25717748)
chr4 (69-160)||(25896842-25896933)
chr4 (50-108)||(21952987-21953045)
chr4 (123-171)||(39691059-39691107)
[»] chr7 (8 HSPs)
chr7 (13-102)||(39539760-39539850)
chr7 (20-160)||(3836604-3836744)
chr7 (124-166)||(17988948-17988990)
chr7 (124-162)||(23214968-23215006)
chr7 (123-164)||(1418531-1418572)
chr7 (50-111)||(48157090-48157151)
chr7 (68-160)||(8427070-8427162)
chr7 (126-162)||(40598404-40598440)
[»] chr1 (10 HSPs)
chr1 (26-111)||(12564469-12564555)
chr1 (49-159)||(10199330-10199440)
chr1 (104-166)||(21002248-21002310)
chr1 (89-163)||(49517147-49517221)
chr1 (127-164)||(3319863-3319900)
chr1 (79-160)||(5157140-5157221)
chr1 (50-139)||(15579521-15579610)
chr1 (78-162)||(28467500-28467584)
chr1 (20-103)||(28689430-28689514)
chr1 (49-165)||(52190167-52190283)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 8820750 - 8821120
Alignment:
Q  1 taaaataacgtgaaattgctttcatataagctatcttggggaacttataaaataaactgaatacagcttatggactagtcataagttatttccctaagct 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  8820750 taaaattacgtgaaattgctttcatataagctatcttggagaacttataaaataaattgaatacagcttatggactaatcataagttatttccctaagct 8820849  T
Q  101 ctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcctaaaaattatcagggttcgttttccttaggaacg 200  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8820850 ctccaaaacagtttcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcctaaaaattatcagggttcgttttccttaggaacc 8820949  T
Q  201 ggagagttgagacaaaaaagaactacacgtagacttttggcttaaaattatagattaaatttgtatgtactatgttagtatatagtttctttaaactatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820950 ggagagttgagacaaaaaagaactacacgtagacttttggcttaaaattatagattaaatttgtatgtactatgttagtatatagtttctttaaactatt 8821049  T
Q  301 ataatctttggttcatgaaaaatgttaaagtgtataccaagctttgctctggctttaaattgggctccaac 371  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8821050 ataatctttggttcatgaaaaatattaaagtgtataccaagctttgctctggctttaaattgggctccaac 8821120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 162
Target Start/End: Complemental strand, 28586797 - 28586685
Alignment:
Q  50 aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataa 149  Q
    |||||| ||||| |||||||| |||   |||||||| ||||||| ||||||||||||||||| ||||| |   ||||||||| ||||  || |||||| |    
T  28586797 aaataagctgaaaacagcttacggatatgtcataagctatttccataagctctcccaaacagtttcacaaatgcttatgctattagactagttcaaatta 28586698  T
Q  150 gtaaatccaaaca 162  Q
    || ||||||||||    
T  28586697 gtcaatccaaaca 28586685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 32172708 - 32172800
Alignment:
Q  66 gcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatcca 158  Q
    ||||||||||  |||||||||| ||||| |||||||||||||||    |||| ||  |||||||||||| ||||| |||||||| || |||||    
T  32172708 gcttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaataaatagatcca 32172800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 38047895 - 38047849
Alignment:
Q  65 agcttatggactagtcataagttatttccctaagctctcccaaacag 111  Q
    |||||||||||  |||||||||| ||||| |||||||||||||||||    
T  38047895 agcttatggacatgtcataagttgtttccataagctctcccaaacag 38047849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 40499742 - 40499694
Alignment:
Q  65 agcttatggactagtcataagttatttccctaagctctcccaaacagat 113  Q
    |||||||||||  |||||||||| ||||| |||||||||| ||||||||    
T  40499742 agcttatggacatgtcataagttgtttccataagctctcctaaacagat 40499694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 15120198 - 15120334
Alignment:
Q  27 taagctatcttggggaacttat-aaaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctctt 125  Q
    ||||||||| ||| || ||||| ||||||| || || |||||| ||| ||  |||||||||| ||||| ||||||||||||||||||||||| |    ||    
T  15120198 taagctatcatggagagcttatcaaaataagcttaaaacagctaatgaacatgtcataagttgtttccataagctctcccaaacagattcacaactgttt 15120297  T
Q  126 atgctagtagataagatcaaataagtaaatccaaaca 162  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  15120298 atgctagtagataagttcaaataagtcaatccaaaca 15120334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 9996805 - 9996889
Alignment:
Q  78 gtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    |||||||||| ||||  ||||||||||||| |||  |||| ||  ||||||||||| |||||| |||||||||| || |||||||    
T  9996805 gtcataagttgtttctataagctctcccaagcagtctcacaagtacttatgctagttgataagctcaaataagtcaagccaaaca 9996889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 1633458 - 1633421
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaa 160  Q
    |||||||||||||||||  |||||||||||||||||||    
T  1633458 cttatgctagtagataaactcaaataagtaaatccaaa 1633421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 5043518 - 5043481
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaa 160  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  5043518 cttatgctagtagataaggtcaaataagtcaatccaaa 5043481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 25609854 - 25609935
Alignment:
Q  69 tatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataag 150  Q
    |||||| | |||||||||| ||||| |||||| | |||| |||  |||| || ||||||| ||||||||||| |||||||||    
T  25609854 tatggatttgtcataagttgtttccataagctattccaagcagtctcacaagttcttatgttagtagataagctcaaataag 25609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 32821848 - 32821909
Alignment:
Q  50 aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacag 111  Q
    |||||||||||| |||||||||||||  |||||||||| ||||  ||| |||| ||||||||    
T  32821848 aaataaactgaaaacagcttatggacatgtcataagttgtttctataaactcttccaaacag 32821909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 16503420 - 16503492
Alignment:
Q  78 gtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataag 150  Q
    |||||||| |||||| ||||||||||||||||||  |||| ||  ||||||| | |||||||  |||||||||    
T  16503420 gtcataagctatttctctaagctctcccaaacagtgtcacaagtacttatgccactagataatctcaaataag 16503492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 22878165 - 22878249
Alignment:
Q  78 gtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    ||||||| || ||||| |||| ||||||||||||  |||| ||  ||||||  ||| |||||| |||||||||| ||||||||||    
T  22878165 gtcataatttgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 43259947 - 43259987
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaa 163  Q
    |||||||||||||||||| |||||||||  |||||||||||    
T  43259947 cttatgctagtagataagttcaaataagccaatccaaacaa 43259987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 37273148 - 37273273
Alignment:
Q  26 ataagctatcttggggaacttata-aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctct 124  Q
    |||||||||||||| ||||||||  ||||||  |||| ||| |||||||||  |||||||||| ||||| |||||||||||||||||  |||||||  ||    
T  37273148 ataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T
Q  125 tatgctagtagataagatcaaataag 150  Q
    ||||||| || ||||| |||||||||    
T  37273248 tatgctaataaataagttcaaataag 37273273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 49845543 - 49845459
Alignment:
Q  78 gtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    |||||||||| ||||| |||||||||||||| || ||||  || | |||| |||||| ||||| |||||||||| ||||||||||    
T  49845543 gtcataagttgtttccataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaaca 49845459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 31010448 - 31010540
Alignment:
Q  57 ctgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataa 149  Q
    ||||| |||||||||||||  |||||||||| ||||  |||||| || |||||| | |||| || ||||||| |||||| |||| ||||||||    
T  31010448 ctgaaaacagcttatggacatgtcataagttgtttctataagctttcacaaacacactcacaagttcttatgttagtagttaagttcaaataa 31010540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 45590735 - 45590803
Alignment:
Q  95 taagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaa 163  Q
    |||||||||||||||||  |||| ||  |||||||||||||||||| ||||| |||| ||| |||||||    
T  45590735 taagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaacaa 45590803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 584158 - 584201
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaagcc 166  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||    
T  584158 cttatgctagtagataagctcaaataagtcaatccaaaccagcc 584201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 16790434 - 16790369
Alignment:
Q  26 ataagctatcttggggaacttat-aaaataaactgaatacagcttatggactagtcataagttattt 91  Q
    ||||||||||||||  | ||||| ||||||||||||| |||||||||||||| |||||||| |||||    
T  16790434 ataagctatcttggatagcttatgaaaataaactgaaaacagcttatggact-gtcataagctattt 16790369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 21872308 - 21872214
Alignment:
Q  68 ttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    ||||||||  |||||||| ||||| |  ||||| | ||||||||  |||| ||  ||||||  ||||||||||||||||||||| ||||||||||    
T  21872308 ttatggacatgtcataagctattttcaaaagcttttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatccaaaca 21872214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 24684780 - 24684740
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaa 163  Q
    ||||||| |||||||||| |||||||||| |||||||||||    
T  24684780 cttatgccagtagataagctcaaataagttaatccaaacaa 24684740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 4055647 - 4055537
Alignment:
Q  50 aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataa 149  Q
    |||||| ||||| |||| ||||||||  |||||||||||||||  ||| ||||||||||||| || || |||  ||||  ||| ||||||| ||||||||    
T  4055647 aaataagctgaaaacagtttatggacatgtcataagttatttctataaactctcccaaacagttttacaagcatttataatagcagataagttcaaataa 4055548  T
Q  150 gtaaatccaaa 160  Q
    | |||||||||    
T  4055547 gaaaatccaaa 4055537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 18331826 - 18331872
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaagcctaa 169  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||    
T  18331826 cttatgttagtagataagatcaaataagtcaatccaaacaagcctaa 18331872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 39866803 - 39866740
Alignment:
Q  13 aaattgctttcatataagctatcttggggaacttat-aaaataaactgaatacagcttatggac 75  Q
    |||||| |||||||||||||||||||  || ||||| ||||||||||||| |||||||||||||    
T  39866803 aaattgttttcatataagctatcttgaagagcttatgaaaataaactgaaaacagcttatggac 39866740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 14949905 - 14949966
Alignment:
Q  50 aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacag 111  Q
    |||||| ||||| |||||||||||||  |||||||||||||| | |||||||||| ||||||    
T  14949905 aaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacag 14949966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 43368658 - 43368619
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  43368658 cttatgttagtagataagatcaaataagtcaatccaaaca 43368619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 9700114 - 9700152
Alignment:
Q  124 ttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  9700114 ttatgctagtagataagctcaaataagttaatccaaaca 9700152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 14926967 - 14926897
Alignment:
Q  96 aagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcc 166  Q
    |||||||| |||||||  |||| ||  ||||||| |||| ||||| |||||||||| ||||||||||||||    
T  14926967 aagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatccaaacaagcc 14926897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 30988007 - 30987955
Alignment:
Q  65 agcttatggactagtcataagttatttccctaagctctcccaaacagattcac 117  Q
    |||||||||||  |||||||||| ||||| ||||||||| |||||||| ||||    
T  30988007 agcttatggacatgtcataagttgtttccataagctctctcaaacagactcac 30987955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 2460154 - 2460070
Alignment:
Q  78 gtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    |||||||||| ||||| ||||||||| |||||||  |||| ||  |||||||||||  ||||| |||||||||| ||||||||||    
T  2460154 gtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaaca 2460070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 32205971 - 32205927
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaagcct 167  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||    
T  32205971 cttatgctagtagataaggtcaaataagtcaatccaaacaggcct 32205927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 9027616 - 9027679
Alignment:
Q  49 aaaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacaga 112  Q
    ||||||| ||||| ||| |||||||||  |||||||||||||||| ||||||||  ||||||||    
T  9027616 aaaataagctgaaaacaacttatggacatgtcataagttatttccataagctctttcaaacaga 9027679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 10616597 - 10616514
Alignment:
Q  26 ataagctatcttggggaacttataaaa-taaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaa 108  Q
    ||||||||| |||| || ||||||||| ||| ||||| ||| |||| ||||  |||||||||| ||||| ||||||||||||||    
T  10616597 ataagctattttggagagcttataaaaataagctgaacacaacttacggacatgtcataagttgtttccataagctctcccaaa 10616514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 32917251 - 32917297
Alignment:
Q  65 agcttatggactagtcataagttatttccctaagctctcccaaacag 111  Q
    |||||||||||  |||||||||| ||||| |||||||||||||||||    
T  32917251 agcttatggacatgtcataagttgtttccataagctctcccaaacag 32917297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 12111079 - 12111116
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaa 160  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  12111079 cttatgctagtagataagctcaaataagtcaatccaaa 12111116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 35070425 - 35070384
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaag 164  Q
    |||||| ||||||||||| ||||||||| |||||||||||||    
T  35070425 cttatgttagtagataagctcaaataagaaaatccaaacaag 35070384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 835219 - 835171
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaagcctaaaa 171  Q
    |||||||||||||||||| |||||||||  ||||||||||  |||||||    
T  835219 cttatgctagtagataagctcaaataaggcaatccaaacagtcctaaaa 835171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 27123355 - 27123271
Alignment:
Q  78 gtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    |||||||||| ||||| ||||||||| |||||||  |||| ||  |||||||||||  ||||| |||||||||| ||||||||||    
T  27123355 gtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaaca 27123271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 6987754 - 6987655
Alignment:
Q  68 ttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcct 167  Q
    ||||||||  |||||||||| | ||| |||||||||||||||||  |||| | | |||||||||||||||||  |||| ||||| ||| |||||| ||||    
T  6987754 ttatggacatgtcataagttgtatccataagctctcccaaacagtctcacaaacacttatgctagtagataaactcaattaagtcaatacaaacatgcct 6987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 14011248 - 14011391
Alignment:
Q  26 ataagctatcttggggaacttata-aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctct 124  Q
    |||||||||||||| || |||||  |||||| ||||| ||||||||  |||  || ||||  | ||| | |||||||||||||| || || ||  |  ||    
T  14011248 ataagctatcttggagagcttatggaaataagctgaaaacagcttaaagacatgtgataaactctttgcataagctctcccaaatagttttacatgtgct 14011347  T
Q  125 tatgctagtagataagatcaaataagtaaatccaaacaagccta 168  Q
    ||||  |||||||||| ||||| |||||||||||||||||||||    
T  14011348 tatgtaagtagataagttcaaagaagtaaatccaaacaagccta 14011391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 25717653 - 25717748
Alignment:
Q  71 tggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcc 166  Q
    ||||| ||||||||||| ||||| |||||||| |||||||  ||||| ||  ||||||   ||| ||||| |||||||||  ||||||||||||||    
T  25717653 tggacaagtcataagttgtttccataagctcttccaaacaatttcacaagtgcttatgtcggtacataagctcaaataagacaatccaaacaagcc 25717748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 25896842 - 25896933
Alignment:
Q  69 tatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 160  Q
    |||||||  |||||||| ||||||  |||||||||| ||||||  |||| ||  || ||||||||||||||  |||||||||| ||||||||    
T  25896842 tatggacatgtcataagctatttctataagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaataagtgaatccaaa 25896933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 21952987 - 21953045
Alignment:
Q  50 aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaa 108  Q
    ||||||||| || |||| ||||||||  |||||||||| ||||| ||||||||||||||    
T  21952987 aaataaactaaaaacaggttatggacatgtcataagttctttccataagctctcccaaa 21953045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 39691107 - 39691059
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaagcctaaaa 171  Q
    |||||||||||||||||| |||||||||| ||| |||||| ||| ||||    
T  39691107 cttatgctagtagataagctcaaataagtcaattcaaacaggccaaaaa 39691059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 39539850 - 39539760
Alignment:
Q  13 aaattgctttcatataagctatcttggggaacttat-aaaataaactgaatacagcttatggactagtcataagttatttccctaagctct 102  Q
    |||||| |||||||||||||||| | |||| ||| | ||||||| ||||| |||||||||||||  |||||||||| ||||| ||| ||||    
T  39539850 aaattgttttcatataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtcataagttgtttccgtaaactct 39539760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 3836744 - 3836604
Alignment:
Q  20 tttcatataagctatcttggggaacttat-aaaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcacc 118  Q
    |||| ||||||||||||||| || || || |||||||  |||| || ||||||| | | |||||||| ||||| | |||| |||||||||||| |||||     
T  3836744 tttcgtataagctatcttggagagctaatgaaaataagttgaagacggcttatgtaat-gtcataagctattttcataagttctcccaaacagtttcaca 3836646  T
Q  119 agctcttatgctagtagataagatcaaataagtaaatccaaa 160  Q
    ||  |||| || |||||||||| |||||||||  ||||||||    
T  3836645 agtgcttaagccagtagataagctcaaataaggcaatccaaa 3836604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 17988990 - 17988948
Alignment:
Q  124 ttatgctagtagataagatcaaataagtaaatccaaacaagcc 166  Q
    |||||| |||||||||| |||||||||| ||||||||||||||    
T  17988990 ttatgcgagtagataagctcaaataagttaatccaaacaagcc 17988948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 23214968 - 23215006
Alignment:
Q  124 ttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  23214968 ttatgctagtagataaggtcaaataagtcaatccaaaca 23215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 1418531 - 1418572
Alignment:
Q  123 cttatgctagtagataagatcaaataagtaaatccaaacaag 164  Q
    ||||||| |||||||||| |||||||||| ||||||||||||    
T  1418531 cttatgccagtagataagctcaaataagtcaatccaaacaag 1418572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 48157151 - 48157090
Alignment:
Q  50 aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacag 111  Q
    |||||| ||||| |||||||||||||  | |||||||| ||||  |||||||||||||||||    
T  48157151 aaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacag 48157090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 8427070 - 8427162
Alignment:
Q  68 ttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 160  Q
    ||||||||  ||| |||||| ||||| || |||| |||||||||  |||| ||  |||||| ||||||||||| |||||||| | ||||||||    
T  8427070 ttatggacacgtcgtaagttgtttccataggctcccccaaacagtctcacaagtacttatgttagtagataagctcaaataaatcaatccaaa 8427162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 40598440 - 40598404
Alignment:
Q  126 atgctagtagataagatcaaataagtaaatccaaaca 162  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  40598440 atgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 12564555 - 12564469
Alignment:
Q  26 ataagctatcttggggaacttata-aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacag 111  Q
    |||||||||||||| ||||||||  |||||| ||||| ||| ||||| |||| |||||||| ||| | | |||||||||||||||||    
T  12564555 ataagctatcttggagaacttatggaaataagctgaaaacaacttattgacttgtcataagctatatacgtaagctctcccaaacag 12564469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 10199440 - 10199330
Alignment:
Q  49 aaaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaata 148  Q
    ||||||| ||||| ||| |||||| ||  |||||||| ||||| | | || ||||||||| ||  |||| ||  |||||| ||||||||||| |||||||    
T  10199440 aaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaata 10199341  T
Q  149 agtaaatccaa 159  Q
    ||| |||||||    
T  10199340 agtcaatccaa 10199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 21002248 - 21002310
Alignment:
Q  104 ccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaagcc 166  Q
    ||||||||  |||| || |||||||| |||||||||| |||||||||  ||||||||||||||    
T  21002248 ccaaacagtctcacaagttcttatgcaagtagataagctcaaataagccaatccaaacaagcc 21002310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 49517147 - 49517221
Alignment:
Q  89 tttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaacaa 163  Q
    ||||| |||||||||||||||| |  ||| ||| ||||| |||||||||||| | |||||||| ||| |||||||    
T  49517147 tttccataagctctcccaaacaaaaccacaagcgcttatactagtagataagtttaaataagtcaattcaaacaa 49517221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 3319900 - 3319863
Alignment:
Q  127 tgctagtagataagatcaaataagtaaatccaaacaag 164  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  3319900 tgctagtagataagctcaaataagtcaatccaaacaag 3319863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 5157140 - 5157221
Alignment:
Q  79 tcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaa 160  Q
    ||||||||| ||||  ||||||||||||||||| ||||| ||   |||||   ||||||||| |||||||||| ||||||||    
T  5157140 tcataagttgtttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaa 5157221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 15579521 - 15579610
Alignment:
Q  50 aaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataa 139  Q
    |||||| ||||  ||| |||||||||  |||||||||| |||||  ||||||||||||||||  |  | || ||||||||||||||||||    
T  15579521 aaataagctgagaacaacttatggacatgtcataagttgtttccacaagctctcccaaacagtcttgcaagttcttatgctagtagataa 15579610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 28467500 - 28467584
Alignment:
Q  78 gtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaataagtaaatccaaaca 162  Q
    |||||||||||||||| ||| |||||||||| ||  |||  ||  || ||||||||| ||||  |||||||||| ||||||||||    
T  28467500 gtcataagttatttccataatctctcccaaatagtctcataagtgctaatgctagtaaataaactcaaataagtcaatccaaaca 28467584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 28689514 - 28689430
Alignment:
Q  20 tttcatataagctatcttggggaacttat-aaaataaactgaatacagcttatggactagtcataagttatttccctaagctctc 103  Q
    ||||||||||||||||||||  | ||||| ||||||| ||||| ||| |||||||||  |||||||| | ||||| |||| ||||    
T  28689514 tttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttccgtaagttctc 28689430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 52190167 - 52190283
Alignment:
Q  49 aaaataaactgaatacagcttatggactagtcataagttatttccctaagctctcccaaacagattcaccagctcttatgctagtagataagatcaaata 148  Q
    ||||||| ||||| || |||| |||||| |||||||| ||||||  ||||||| | ||||||| |||| |||   ||| ||  ||||||| | |||||||    
T  52190167 aaaataagctgaaaacggcttgtggacttgtcataagatatttctataagctcactcaaacagtttcaacagtgtttaagcaggtagatatgttcaaata 52190266  T
Q  149 agtaaatccaaacaagc 165  Q
    ||  |||||||||||||    
T  52190267 agccaatccaaacaagc 52190283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University