View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_42 (Length: 384)
Name: NF3223_low_42
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_42 |
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| [»] scaffold0771 (2 HSPs) |
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Alignment Details
Target: scaffold0771 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 2551 - 2339
Alignment:
| Q |
19 |
aaatgttcgtccaattttcttatacaagtaaattggtaacaggagactatatttaacattgtattaattaatcactgatcagaataaatttccaaataaa |
118 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2551 |
aaatgtttgtccaattttcttagacaagtaaattggtaacagtagactatatttaacattgtattaattaatcactgatcagaataaatttccaaataaa |
2452 |
T |
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| Q |
119 |
taatatgctttttgtgttcacatttactttaaaaacat-acctaaggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccac |
217 |
Q |
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| T |
2451 |
taatatgcttcttgtgttcacatttactttaaaaacatcacctaaggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccac |
2352 |
T |
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| Q |
218 |
aaattacctacca |
230 |
Q |
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||||||||||||| |
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| T |
2351 |
aaattacctacca |
2339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 182 - 371
Target Start/End: Complemental strand, 2340 - 2151
Alignment:
| Q |
182 |
cagatgaatttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacg |
281 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2340 |
cagatgaatttagatgtttcccacaattcgcgtcacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacg |
2241 |
T |
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| Q |
282 |
tgttagaaataaaaacatatatcaaagcttttgtaattggtcatgacatggcttcaaacctttggtactgccattgacaagcataccttc |
371 |
Q |
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| T |
2240 |
tggtagaaataaaaacagatatcaaagcttttgtaattggtcatgacatggctgcagacctttggtactgccattgacaagcataccttc |
2151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 13950411 - 13950199
Alignment:
| Q |
19 |
aaatgttcgtccaattttcttatacaagtaaattggtaacaggagactatatttaacattgtattaattaatcactgatcagaataaatttccaaataaa |
118 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13950411 |
aaatgtttgtccaattttcttagacaagtaaattggtaacagtagactatatttaacattgtattaattaatcactgatcagaataaatttccaaataaa |
13950312 |
T |
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| Q |
119 |
taatatgctttttgtgttcacatttactttaaaaacat-acctaaggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccac |
217 |
Q |
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| T |
13950311 |
taatatgcttcttgtgttcacatttactttaaaaacatcacctaaggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccac |
13950212 |
T |
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| Q |
218 |
aaattacctacca |
230 |
Q |
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||||||||||||| |
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| T |
13950211 |
aaattacctacca |
13950199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 182 - 371
Target Start/End: Complemental strand, 13950200 - 13950011
Alignment:
| Q |
182 |
cagatgaatttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacg |
281 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13950200 |
cagatgaatttagatgtttcccacaattcgcgtcacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacg |
13950101 |
T |
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| Q |
282 |
tgttagaaataaaaacatatatcaaagcttttgtaattggtcatgacatggcttcaaacctttggtactgccattgacaagcataccttc |
371 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
13950100 |
tggtagaaataaaaacagatatcaaagcttttgtaattggtcatgacatggctgcagacctttggtactgccattgacaagcataccttc |
13950011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 191 - 353
Target Start/End: Complemental strand, 20900423 - 20900261
Alignment:
| Q |
191 |
ttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacgtgttagaaa |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20900423 |
ttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattagaagaacgtgttagaaa |
20900324 |
T |
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| Q |
291 |
taaaaacatatatcaaagcttttgtaattggtcatgacatggcttcaaacctttggtactgcc |
353 |
Q |
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| T |
20900323 |
taaaaacaggtatcaaagcttttgtaataggtaatgacatggctttaaaacttcagtactgcc |
20900261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 20900859 - 20900680
Alignment:
| Q |
18 |
aaaatgttcgtccaattttcttatacaagtaaattgg-taacaggagactatatttaacattgtattaattaatcactgatcagaataaatttccaaata |
116 |
Q |
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|||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||| | || |||||||||| ||||| |
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| T |
20900859 |
aaaatgtttgtccaattttcttagacaagtaaattgggtaacagtagactatatttaacattgtattaattaaacacttaacataataaatttcgaaata |
20900760 |
T |
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| Q |
117 |
aataatatgctttttgtgttcacatttactttaaaaacat-acctaaggacatgcgaagatgatgacagatgaatttaga |
195 |
Q |
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|||||||||||| |||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||| |
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| T |
20900759 |
aataatatgcttcttgtgtccacatctactttaaaaacatcacctaaggacatgcaaagatgatgacagatgaacttaga |
20900680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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