View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_46 (Length: 380)
Name: NF3223_low_46
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 15899617 - 15899980
Alignment:
| Q |
1 |
acaccaaagatcatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgcgg |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
15899617 |
acaccaaagattatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctg |
15899716 |
T |
|
| Q |
101 |
aatatggcnnnnnnntccaacaagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactga |
200 |
Q |
| |
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| |||||| | | ||||||||||||||||||||| |||||| || |||| |||||||||||||| |||||||||||||||||||| |
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| T |
15899717 |
attatggcaaaaaaattgataaagatgctaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaagatttgaagaatatgttcactga |
15899816 |
T |
|
| Q |
201 |
ggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaatgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
15899817 |
ggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgc |
15899916 |
T |
|
| Q |
301 |
ccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttgg |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15899917 |
ccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatacttttttgttgg |
15899980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 364
Target Start/End: Complemental strand, 15874451 - 15874089
Alignment:
| Q |
2 |
caccaaagatcatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgcgga |
101 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
15874451 |
caccaaagattatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctaa |
15874352 |
T |
|
| Q |
102 |
atatggcnnnnnnntccaacaagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgag |
201 |
Q |
| |
|
|||| | | | |||||| ||||||||||||||| |||||| || |||| |||||||||||| | |||||||||||||||||||| |
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|
| T |
15874351 |
ttatgccaaaaaaattgataaagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgag |
15874252 |
T |
|
| Q |
202 |
gatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaatgcc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15874251 |
gatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatgggaaatgttgatgaccaatgcc |
15874152 |
T |
|
| Q |
302 |
cggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttgg |
364 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15874151 |
cgaatgccctaaaccttaagtttgaccaactgatgcacatatggagagatactttattgttgg |
15874089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 15920645 - 15920998
Alignment:
| Q |
1 |
acaccaaagatcatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgcgg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920645 |
acaccaaagattatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgctt |
15920744 |
T |
|
| Q |
101 |
aatatggcnnnnnnntccaacaagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactga |
200 |
Q |
| |
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| |||||| | | |||||| |||||||||||||| |||||| || |||| |||||||||||| | |||||||||||||||||||| |
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| T |
15920745 |
attatggcaaaaaaattgataaagatgttaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaatatttgaagaatatgttcactga |
15920844 |
T |
|
| Q |
201 |
ggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaatgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
15920845 |
ggatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacactttatggaaaatgttgatgaccaatgc |
15920944 |
T |
|
| Q |
301 |
ccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatact |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15920945 |
ccggatgccctaaaccttaagtttgaccaactgatgcacatatggagagatact |
15920998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 2 - 351
Target Start/End: Complemental strand, 14060866 - 14060517
Alignment:
| Q |
2 |
caccaaagatcatatcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgcgga |
101 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||| |||| ||| |||||||||||||| ||||| ||||||||||| || | |||| ||| ||| |
|
|
| T |
14060866 |
caccaaagattatatcatttggtccgatccatcacaataataaatgtcttaaagaaggagagcagtacaaacttctatggacctctacatttcttgagga |
14060767 |
T |
|
| Q |
102 |
atatggcnnnnnnntccaacaagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgag |
201 |
Q |
| |
|
||||||| || | ||||||| |||| ||||||| ||||||||| || |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
14060766 |
atatggcaaagaaatcaatcaagatggtaaccaagcatgcaaacttttgcttaacaagattgaagataatattgaagaattgaagaacatgttcactgaa |
14060667 |
T |
|
| Q |
202 |
gatgcaattgaaggctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaatgcc |
301 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||| | |
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| T |
14060666 |
gatgcaattgaaggattcaatgacaatgatcttgcttggatattgttcgtggatggatgttccttgctacatttcatgggaaatgtcgatgaccaatatc |
14060567 |
T |
|
| Q |
302 |
cggatgccctaaaccttaagtttgaccaactgatgcacatatggagagat |
351 |
Q |
| |
|
| || | ||||| ||||||||||||||| ||||| | |||||||||||| |
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|
| T |
14060566 |
ccgaagggctaaatcttaagtttgaccaattgatgtatatatggagagat |
14060517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 14049481 - 14049146
Alignment:
| Q |
16 |
tcatttggtcctattcatcacaatgctaaaaatctgaaagaaggagagcattacaagcttctatggacatcaatatttgttgcggaatatggcnnnnnnn |
115 |
Q |
| |
|
||||||||||| || ||||||||| | || ||| |||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |
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|
| T |
14049481 |
tcatttggtcccatccatcacaatagtgaatgtcttaaagaaggagagcattacaagcttctgtggacatctacatttgttgaggaatatggcaaacaaa |
14049382 |
T |
|
| Q |
116 |
tccaacaagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaagg |
215 |
Q |
| |
|
|| | ||||||| || |||| || ||||||||| || |||| |||||||||| |||||||||||| |||||||| || |||||||||||||| |
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|
| T |
14049381 |
tcaatcaagatggccaccaagcctgcaaacttttgcttaacaagattgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaagg |
14049282 |
T |
|
| Q |
216 |
ctacaatgataatgatcttgcttggatattgtttgtggatggatgttctttgctacattttatgggaaatgttgatgaccaatgcccggatgccctaaac |
315 |
Q |
| |
|
| |||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||| |||||||||| || || | ||||| |
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|
| T |
14049281 |
attcaatgacaacgatcttgcttggatattgttcgtggatggatgttccttgctgcattttatggaaaatgtcgatgaccaatatcctgaagggctaaat |
14049182 |
T |
|
| Q |
316 |
cttaagtttgaccaactgatgcacatatggagagat |
351 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
14049181 |
cttaagtttgatcaattgatgtacatatggagagat |
14049146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 21785704 - 21785739
Alignment:
| Q |
238 |
tggatattgtttgtggatggatgttctttgctacat |
273 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
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|
| T |
21785704 |
tggatgttgtttgtggatggatgttctttgctacat |
21785739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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