View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_48 (Length: 373)
Name: NF3223_low_48
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 2913127 - 2912799
Alignment:
| Q |
13 |
gagatgaaccacctcgttgtctaatgttatattttattttggtttgttnnnnnnnnnnnn---tattatatgagcctttaacttcaatctagtgaaatgt |
109 |
Q |
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| T |
2913127 |
gagatgaaccacctcgttgtctaatgttatattttattttggtttgttaaaaaaatatatatatattatatgagcctttaacttcaatttagtgaaatat |
2913028 |
T |
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| Q |
110 |
ttacttctatcgagtggtagtgtaattgttaaaaattcacaatgnnnnnnnnnnnnnnnnntagagaatttagggttcaaactccggtcactgcggattg |
209 |
Q |
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| T |
2913027 |
ttatttttatcgagttgtagtgtaattgttaaaaat-cacaatgaaaaaaa----------tagagaatttagcgttcaaactccggt----gcgaattg |
2912943 |
T |
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| Q |
210 |
atggaagctcgtgggacattagaagataggttctataagcaaaatcagaagattcggataggttgagcaactcaaggctattaaagcaatttccttgaat |
309 |
Q |
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| T |
2912942 |
atgaaagcttgtgggacattagaagataggttctataagcaaaatcagaagattcggataggttgagcaactcaaggctattaaagcaatttccttgaat |
2912843 |
T |
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| Q |
310 |
aattaat-----aactacccagaaactactcgtgttagtttcgg |
348 |
Q |
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| T |
2912842 |
aattaattaataaactacccagaaactactcgtgttagtttcgg |
2912799 |
T |
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