View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_5 (Length: 639)
Name: NF3223_low_5
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_5 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 121 - 598
Target Start/End: Complemental strand, 3005958 - 3005494
Alignment:
| Q |
121 |
gtaaattattcgataaagcattgtgactgagttaaatataatctcttataaatgacgaataggtacaaatgcgttaacaatgtgcttttaaataacaaac |
220 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
3005958 |
gtaaattattcgataaagcattgtgattgagttaaatataatctcttataaacggcgaataggtacaaatacgttaacaatgtgcttagaaataacaaac |
3005859 |
T |
|
| Q |
221 |
attcgcaatcactaaggcaatcactaagtagatatatgcaatattatctatctataatttataaaaccaacaaacnnnnnnnnnnnnnnnnnnataaaat |
320 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3005858 |
attcgcaatcactaag------------tagatatatgcaatattatctatctataatttataaaaccaacaaactttttatttttattttt-ataaaat |
3005772 |
T |
|
| Q |
321 |
caacaacttagttaatttaatt-----gatccttcaaaacaaatgtgcagatctatataaattatggttgaaacattatggagactggccccaaacaggt |
415 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3005771 |
caacaacttagttaatttaatttaattgatcctttaaaacaaatgtgcagatctatataaattatggttgaaacattatggagactggccccaaacaggt |
3005672 |
T |
|
| Q |
416 |
gaaattatacaaacttatagtgagacattttcacaaattttataatatatcgataaaaaa-tgagaattggccaaagaacaatattctcatttattttat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3005671 |
gaaattatacaaacttatagtgagacattttcacaaat------atatatcagtaaaaaaatgagaattggccaaagaacaatattctcatttattttat |
3005578 |
T |
|
| Q |
515 |
agcaaagccaactttatgtatgattcaagtggattgatttatttttgatgatatattcatttatcgttgatcatctgttgtatt |
598 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
3005577 |
agcaaggccaactttatgtatgattcaagtggattgatttatttttgatgatatattcatttatcgttgatcatatgttgtatt |
3005494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 322 - 529
Target Start/End: Original strand, 4641228 - 4641447
Alignment:
| Q |
322 |
aacaacttagttaatttaattgatccttcaaaacaaatgtgcagatctatataaattatggttgaaacattatggaga---------ctggccccaaaca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||| |
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|
| T |
4641228 |
aacaacttagttaatttaattgatccttcaaaacaaatgtgcagatctatataaaatatggttgaaacattatggagaatgtcgagactgactccaaaca |
4641327 |
T |
|
| Q |
413 |
ggtgaaattatacaaacttatagtgagacattttcacaaattttataatatatc---gataaaaaatgagaattggccaaagaacaatattctcatttat |
509 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| || |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4641328 |
ggtgaaattatacaaacttatagcgagacatttccacaaattttgtaatatatcgaagaaaaaaaatgagaattggccaaaggtcaatattctcatttat |
4641427 |
T |
|
| Q |
510 |
tttatagcaaagccaacttt |
529 |
Q |
| |
|
|||||||||| | ||||||| |
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|
| T |
4641428 |
tttatagcaaggacaacttt |
4641447 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 19643890 - 19643791
Alignment:
| Q |
20 |
aggcggcggcagaaaggtgatggagagtcaaacttcctgaaagtgcttttaaacagatagaagcacgttttctctttttgaacgtgtaaccaaacacgta |
119 |
Q |
| |
|
|||||||||||||| | | |||||||| ||||| |||| ||||||||||| ||||||| ||||| ||||||| ||||||| |||||||||||||||||| |
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|
| T |
19643890 |
aggcggcggcagaaggattatggagagccaaacatcctcaaagtgcttttgaacagatggaagcgcgttttccgtttttgaccgtgtaaccaaacacgta |
19643791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 4641162 - 4641209
Alignment:
| Q |
246 |
aagtagatatatgcaatattatctatctataatttataaaaccaacaa |
293 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
4641162 |
aagtagatatatgcaatattatctatttaaaatttccaaaaccaacaa |
4641209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 325 - 598
Target Start/End: Original strand, 5562630 - 5562901
Alignment:
| Q |
325 |
aacttagttaatttaattgatccttcaaaacaaatgtgcagatctatataaattatggttgaaacattatggagactggccccaaacaggtgaaattata |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||| | |
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|
| T |
5562630 |
aacttagttaatttaattgatccttcaaaaaaaatgtgcagatctatataaattatggctaaaacattatggagaccagccccaaataggtgaaattaaa |
5562729 |
T |
|
| Q |
425 |
caaacttatagtgagacattttcacaaattttataatatatc--gataaaaaatgagaattggccaaagaacaatattctcatttattttatagcaaagc |
522 |
Q |
| |
|
||||||||||| |||| | | | |||||||| | ||||||| || ||||||||||||||||||||||| ||||||| | |||||||||||||||| || |
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|
| T |
5562730 |
caaacttatagcgaga-aataactcaaattttgtgatatatcgagaaaaaaaatgagaattggccaaagatcaatattttaatttattttatagcaaggc |
5562828 |
T |
|
| Q |
523 |
caactttatgtatgattcaagtggattgatttatttttgatgatatattcatttatcgttgatcatctgttgtatt |
598 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||| || ||||| |||||| |||||||||| ||||||| |
|
|
| T |
5562829 |
caactttatgtatgatttaagt--tttgattt-gttttgataatgtattcgtttatcattgatcatctattgtatt |
5562901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 7007943 - 7007843
Alignment:
| Q |
19 |
aaggcggcggcagaaaggtgatggagagtcaaacttcctgaaagtgcttttaaacagatagaagcacgttttctctttttgaacgtgtaaccaaacacgt |
118 |
Q |
| |
|
||||||||||||||| | | ||||| || ||||| |||| ||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
7007943 |
aaggcggcggcagaaggattatggaaagccaaacatcctcaaagtgcttttgaacagatggaagcacgttttccgtttttgaccgtgtaaccaaacacgt |
7007844 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
|
| |
|
|
| T |
7007843 |
a |
7007843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 5562564 - 5562610
Alignment:
| Q |
246 |
aagtagatatatgcaatattatctatctataatttataaaaccaaca |
292 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||||| ||||||||||||| |
|
|
| T |
5562564 |
aagtaggtatatccaatattatctatgtataatatataaaaccaaca |
5562610 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 1659383 - 1659491
Alignment:
| Q |
126 |
ttattcgataaagcattgtgactgagttaaatataatctcttataaatgacgaataggtacaaatgcgttaacaatgtgcttttaaataacaaacattcg |
225 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||| || |||||||||||||||| |
|
|
| T |
1659383 |
ttattcgataaagccatgtggctaagttaaatataatctcttataaacgacgaattggtacgaataagttaacaatgtgtttagaaataacaaacattcg |
1659482 |
T |
|
| Q |
226 |
caatcacta |
234 |
Q |
| |
|
||||||||| |
|
|
| T |
1659483 |
caatcacta |
1659491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 32225663 - 32225771
Alignment:
| Q |
126 |
ttattcgataaagcattgtgactgagttaaatataatctcttataaatgacgaataggtacaaatgcgttaacaatgtgcttttaaataacaaacattcg |
225 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||||| || ||||||||||||||| |
|
|
| T |
32225663 |
ttattcgataaagccttgtgagtgagttaaatataatctcttataaacgtcgaattggtacgaataagttaacaatgtgtttagaaataacaaacattca |
32225762 |
T |
|
| Q |
226 |
caatcacta |
234 |
Q |
| |
|
||||||||| |
|
|
| T |
32225763 |
caatcacta |
32225771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 488 - 590
Target Start/End: Complemental strand, 7853491 - 7853391
Alignment:
| Q |
488 |
aaagaacaatattctcatttattttatagcaaagccaactttatgtatgattcaagtggattgatttatttttgatgatatattcatttatcgttgatca |
587 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |||||||| || ||||| |||||| ||||||| |
|
|
| T |
7853491 |
aaagatcaatattctcatttattttatagcaaggccaactttatgtatgatttaagt--tttgatttgtttttgataatgtattcgtttatcattgatca |
7853394 |
T |
|
| Q |
588 |
tct |
590 |
Q |
| |
|
||| |
|
|
| T |
7853393 |
tct |
7853391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 7853623 - 7853567
Alignment:
| Q |
315 |
taaaatcaacaacttagttaatttaattgatccttcaaaacaaatgtgcagatctat |
371 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7853623 |
taaaaccaacaatttagttaatttaattgatccttcaaaacaaatgtgcagatctat |
7853567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 44579781 - 44579734
Alignment:
| Q |
246 |
aagtagatatatgcaatattatctatctataatttataaaaccaacaa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44579781 |
aagtagatatatgcaatattatctatctataatttataaaaccaacaa |
44579734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 7853681 - 7853639
Alignment:
| Q |
246 |
aagtagatatatgcaatattatctatctataatttataaaacc |
288 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7853681 |
aagtaggtatatgcaatattatctatctataatatataaaacc |
7853639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 468
Target Start/End: Complemental strand, 7853569 - 7853493
Alignment:
| Q |
392 |
tatggagactggccccaaacaggtgaaattatacaaacttatagtgagacat-tttcacaaattttataatatatcga |
468 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
7853569 |
tatggagaccggccccaaacaggtg-aattaaacaaacttatagcaagacataactcacaaattttatgatatatcga |
7853493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 4341727 - 4341627
Alignment:
| Q |
19 |
aaggcggcggcagaaaggtgatggagagtcaaacttcctgaaagtgcttttaaacagatagaagcacgttttctctttttgaacgtgtaaccaaacacgt |
118 |
Q |
| |
|
||||||||| ||| | ||| |||||||| ||||| |||| ||||||||||| | ||||| ||||| | |||||| |||| | ||||||||||||||||| |
|
|
| T |
4341727 |
aaggcggcgacaggagggttatggagagccaaacatcctcaaagtgcttttgagcagatggaagcgcattttctgttttcaaccgtgtaaccaaacacgt |
4341628 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
|
| |
|
|
| T |
4341627 |
a |
4341627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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