View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_50 (Length: 369)

Name: NF3223_low_50
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_50
NF3223_low_50
[»] chr2 (4 HSPs)
chr2 (13-369)||(32444780-32445138)
chr2 (98-208)||(32438210-32438325)
chr2 (200-269)||(32437977-32438046)
chr2 (13-65)||(32438373-32438425)


Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 32445138 - 32444780
Alignment:
Q  13 agaacccaaacactttcatcatgttatgtaaattgatgcaaatttcagatggggttacnnnnnnnctttactctatctgaattcaaggtctatcgtggaa 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||       |||||||||||||||||||||||||||||||||||    
T  32445138 agaacccaaacactttcatcatgttatgtaaattgatgcagatttcagatggggctactttttttctttactctatctgaattcaaggtctatcgtggaa 32445039  T
Q  113 aggacaatttatgaatgggtttggtcggtatcaattcatgtttaatgagagcaaaaaccaaccaaaactagcttataatccaattatttaaaacaatatg 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32445038 aggacaatttctgaatgggtttggtcggtatcaattcatgtttaatgagagcaaaaaccaaccaaaactagcttataatccaattatttaaaacaatatg 32444939  T
Q  213 catttgtcacttatacaaaacaaattaaacacaatagatagaaagaggaatccaaaactaatagagagacaagacattagacaacacttgtccg--tata 310  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |  ||||    
T  32444938 catttgtcatttatacaaaacaaattaaacacaatagatagaaagaggaatccaaaaccaaaagagagacaagacattagacaacacttgtctgtatata 32444839  T
Q  311 tataaagaggttatccttgctattctaagcaacaaagacacacaacatagagcatttta 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32444838 tataaagaggttatccttgctattctaagcaacaaagacacacaacatagagcatttta 32444780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 32438325 - 32438210
Alignment:
Q  98 aggtctatcgtggaaaggacaatttatgaatgggtttggtcggt------atcaattcatgtttaatgagagcaaaaaccaaccaaaactagcttataat 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||      ||| ||||||||||||||||||||||||| ||||||||||||||  ||||    
T  32438325 aggtctatcgtggaaaggacaatttatgaatgggtttggtcggtttaaacatctattcatgtttaatgagagcaaaaacaaaccaaaactagct--taat 32438228  T
Q  192 ccaattat-ttaaaacaa 208  Q
    |||||||| |||||||||    
T  32438227 ccaattatattaaaacaa 32438210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 32438046 - 32437977
Alignment:
Q  200 ttaaaacaatatgcatttgtcacttatacaaaacaaattaaacacaatagatagaaagaggaatccaaaa 269  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||||||    
T  32438046 ttaaaacaatatgcatttgtcacttatacaaaacaaattatacacaacagatatgaagaggaatccaaaa 32437977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 32438425 - 32438373
Alignment:
Q  13 agaacccaaacactttcatcatgttatgtaaattgatgcaaatttcagatggg 65  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  32438425 agaacccaaacactttcatcatgctatgtaaattgatgcaaatttcaggtggg 32438373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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