View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_51 (Length: 367)
Name: NF3223_low_51
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 145 - 292
Target Start/End: Original strand, 2274384 - 2274531
Alignment:
| Q |
145 |
gatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaatataggttgacgactcttttgtttgtactttgac |
244 |
Q |
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| T |
2274384 |
gatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaatataggttgacgactcttttgtttgtactttgac |
2274483 |
T |
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| Q |
245 |
tgaataggttgcgacttaaataggtgtgtgcagtaacaaacatcacag |
292 |
Q |
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| T |
2274484 |
tggataggttgcgacttaaataggtgtgtgcagtaacaaacatcacag |
2274531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 145 - 267
Target Start/End: Original strand, 2272828 - 2272950
Alignment:
| Q |
145 |
gatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaatataggttgacgactcttttgtttgtactttgac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272828 |
gatttgattaccactgattaattgaatccattatttggcagcacacacagagcttcatttggtgaatataggttgacgactcttttgtttgtactttgac |
2272927 |
T |
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| Q |
245 |
tgaataggttgcgacttaaatag |
267 |
Q |
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||||||||||||||||||||||| |
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| T |
2272928 |
tgaataggttgcgacttaaatag |
2272950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2274240 - 2274304
Alignment:
| Q |
1 |
tgatctttgtcgatgtctctgatcatgtacctaaatagtgagattagaaacatacattaattgag |
65 |
Q |
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| T |
2274240 |
tgatctttgtcgatgtctctgatcatgtacctaaatagtgagattagaaacatacattaattgag |
2274304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2272682 - 2272748
Alignment:
| Q |
1 |
tgatctttgtcgatgtctctgatcatgtacctaaatagtgagattagaaac--atacattaattgag |
65 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2272682 |
tgatctttgtcgatgtctctcatcatgtacctaaatagtgagattagaaacatatacattaattgag |
2272748 |
T |
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