View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_6 (Length: 618)
Name: NF3223_low_6
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 4470058 - 4470334
Alignment:
| Q |
1 |
ctccgtgagaaattcgttgtttgttaccgttgatctacgaccggaggctaccggtgatggcggcggtgcacggaaatcaacggtggtttccggcatggtt |
100 |
Q |
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| T |
4470058 |
ctccgtgagaaattcgttgtttgttaccgttgatctacgaccggaggctaccggtgatggcggcggtgcacggaaatcaacggtggtttccggcatggtt |
4470157 |
T |
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| Q |
101 |
cgcggcgttagtattaatgatcgcattatgaaaatggtgtgagtgagaatttgtgaaatttgtgattatttgaaagcaacaatgagaatggttttaattt |
200 |
Q |
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| T |
4470158 |
cgcggcgttagtattaatgatcgcattatgaaaatggtgtgagtgagaatttgtgaaatttgtgattatttgaaagcaacaatgagaatggttttaattt |
4470257 |
T |
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| Q |
201 |
atttcaaaaacaaaagtaacaattgagaaaaagcgatgatgatagtgtgtctgttgatcggtaacattacgacgtcg |
277 |
Q |
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| T |
4470258 |
atttcaaaaacaaaagtaacaattgagaaaaagcgatgatgatagtgtgtctgttgatcggtaacattacgacgtcg |
4470334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 331 - 611
Target Start/End: Original strand, 4470388 - 4470669
Alignment:
| Q |
331 |
acagaggacattgttgataccagtgtgtttttctcatcatttcattggagcccagtaacaactcatcctgggggccatctt-caaattaaactcatgcat |
429 |
Q |
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| T |
4470388 |
acagaggacattgttgataccagtgtgtttttctcatcatttcattggagcccagtaacaactcatcctgggggccatctttcaaattaaactcatgcat |
4470487 |
T |
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| Q |
430 |
cataaaatttagagaattgttcttctccaattttagaattacttgttcaacgtgactcatgtagttgtatttttcagggtgacttaactacgtagtaata |
529 |
Q |
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| T |
4470488 |
cataaaatttagagaattgttcttctccaattttagaattacttgttcaacgtgactcacgtagttgtatttttcagggtgacttaactacgtagtaata |
4470587 |
T |
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| Q |
530 |
cgatgatcgacaattctaaatagtagaagagcaattctctaaaatttatccaatttaacaatctgattatcttaggcctatg |
611 |
Q |
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| T |
4470588 |
cgatgatggacaattctaaatagtagaagagcaattctctaaaatttatccaatttaacaatctgattatcttaggcctatg |
4470669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 569
Target Start/End: Complemental strand, 23806225 - 23806194
Alignment:
| Q |
538 |
gacaattctaaatagtagaagagcaattctct |
569 |
Q |
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| T |
23806225 |
gacaattctaaatagtagaagagcaattctct |
23806194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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