View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_low_65 (Length: 334)
Name: NF3223_low_65
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 11164794 - 11164477
Alignment:
| Q |
5 |
aatccaatcccttcgaacaagggacaacattagcatccacactaggaacaacattattatcaccaacattaaccttaacattatcactactagtagaacc |
104 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11164794 |
aatccaatccctccgaacaagtaacaacattagcatccacactaggaacaacattattatcaccaacattaaccttaacattatcactactagtagaacc |
11164695 |
T |
|
| Q |
105 |
taattccacaacactcttgttatcttcaccttcatttttacaatcaccctttcgttgtttcctccgcgatggaccaaacccagaataataatagaattca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11164694 |
taattccacaacactcttgttatcttcaccttcacttttacaatcaccctttcgttgtttcctccgcgatggaccaaacccagaataataatagaattca |
11164595 |
T |
|
| Q |
205 |
ttattatttgaacccgaagccgaacccac---cgacttcttcggtcggcctctaccacgccgcggagcctcaatgccgccgccccctttcgagtttctct |
301 |
Q |
| |
|
||| |||| ||||||||||| |||||||| ||||||||||||||||||||||| || || || |||||||||| |||||||| ||||||||||||| |
|
|
| T |
11164594 |
ttactattcgaacccgaagctgaacccaccagcgacttcttcggtcggcctctacagcgtcgtggcgcctcaatgctcccgcccccattcgagtttctct |
11164495 |
T |
|
| Q |
302 |
tcaaacttttgttgctgc |
319 |
Q |
| |
|
|||||| |||| |||||| |
|
|
| T |
11164494 |
tcaaacctttgctgctgc |
11164477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 203 - 319
Target Start/End: Complemental strand, 11157654 - 11157538
Alignment:
| Q |
203 |
cattattatttgaacccgaagccgaacccaccgacttcttcggtcggcctctaccacgccgcggagcctcaatgccgccgccccctttcgagtttctctt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
11157654 |
cattattatttgaacccgaagccgaacccaccgacttcttcggtcggcctctaccacgccgcggagcctcaatgccgccgcccccattccagtttctctt |
11157555 |
T |
|
| Q |
303 |
caaacttttgttgctgc |
319 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
11157554 |
caaacctttgttgctgc |
11157538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 316
Target Start/End: Original strand, 4703452 - 4703697
Alignment:
| Q |
65 |
caccaacattaaccttaacattatcactactagtagaacctaattccacaacactcttgttatcttcaccttcatttttacaatcaccctttcgttgttt |
164 |
Q |
| |
|
||||||||||||||||||||| || ||||||| || |||||| | ||||||||||||||||||||||| ||||||||| ||||| |||||| | |
|
|
| T |
4703452 |
caccaacattaaccttaacatcatgactactacta---cctaatgctacaacactcttgttatcttcaccatcattttta---tcacctcttcgtt---t |
4703542 |
T |
|
| Q |
165 |
cctccgcgatggaccaaacccagaataataatagaattcattattatttgaacccgaagccgaacccac---cgacttcttcggtcggcctctaccacgc |
261 |
Q |
| |
|
|| || | ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||| || | | ||||||||||| ||||||||||||| |
|
|
| T |
4703543 |
ccctcgtggtggaccaaacccagaataaaaatagaattcattattattcgaacctgaagctgaatccgctttcaccttcttcggtctgcctctaccacgc |
4703642 |
T |
|
| Q |
262 |
cgcggagcctcaatgccgccgccccctttcgagtttctcttcaaacttttgttgc |
316 |
Q |
| |
|
||||| ||||||||| | || ||||| || |||||||||||||||| |||||||| |
|
|
| T |
4703643 |
cgcggcgcctcaatgtctcctcccccatttgagtttctcttcaaacctttgttgc |
4703697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University