View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_67 (Length: 331)
Name: NF3223_low_67
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 3402102 - 3401797
Alignment:
| Q |
11 |
cacagagaaagagaatcttctccgtggaaggaagatgaagatgagagttaggtattgtaccagcagtagacaccggtggagctgccgttggcgttgatgt |
110 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3402102 |
cacaaagaaagagaatcatctccgtggaaggaagatgaagatgagagttaggtattgtaccagcagtagacacgggtggagctgccgttggcgttgatgt |
3402003 |
T |
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| Q |
111 |
tgaagtcacctcattttcctgtgtttttagcatctgctcagactgttcatttcccagaaaactgcttaccactacctgatacatatcaatccattggaaa |
210 |
Q |
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| T |
3402002 |
tggagtcacctcattttcctgtgtttttagcatctgctcagactgttcatttcccagagaactgcttaccactacctgatacatatcaatccattggaaa |
3401903 |
T |
|
| Q |
211 |
gagtaatgagaattgcatagacttttcactgagaattagttaccacaaattttgcgttttactacacactggatagtagcaatttcgttagcaggacact |
310 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3401902 |
gagtaatgagaattgcatagacttgtcactgagaattagttaccacaaagtttgcgttttactacacactggatagtagcaatttcgttagcaggacact |
3401803 |
T |
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| Q |
311 |
aataat |
316 |
Q |
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|||||| |
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| T |
3401802 |
aataat |
3401797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 3378181 - 3377908
Alignment:
| Q |
11 |
cacagagaaagagaatcttctccgtggaaggaagatgaagatgagagttaggtattgtaccagcagtagacaccggtggagctgccgttggcgttgatgt |
110 |
Q |
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| T |
3378181 |
cacaaagaaagagactcatctccgtggaaggaagatgaagatgaaagtaaggtattgtaccagcagtagacacaggagcagctgccattggcgttaatgt |
3378082 |
T |
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| Q |
111 |
tgaagtcacctcattttcctgtgtttttagcatctgctcagactgttcatttcccagaaaactgcttaccactacctgatacatatcaatccattggaaa |
210 |
Q |
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| T |
3378081 |
tgaagtcacctcattttcccgcgttcttagcttctgctcggactgttcatttgccagaaaactgcttaccactacctgatacatatcaatccactggaaa |
3377982 |
T |
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| Q |
211 |
gagtaatgagaattgcatagacttttcactgagaattagttaccacaaattttgcgttttactacacactggat |
284 |
Q |
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| T |
3377981 |
gagtaacgaaaattgcatagacttgtcactgagaattagttaccacaaagtttgcgttttactacacactggat |
3377908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 3373951 - 3373755
Alignment:
| Q |
29 |
tctccgtggaaggaagatgaagatgagag-ttaggtattgtaccagcagtagacaccggtggagctgccgttggcgttgatgttgaagtcacctcatttt |
127 |
Q |
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| T |
3373951 |
tctccatggaaggaagatggagatgagaggttaggtattgtaccagcagtagacacgggagcagctgccgttggtgtaacggttgaagttacctcatttt |
3373852 |
T |
|
| Q |
128 |
cctgtgtttttagcatctgctcagactgttcatttcccagaaaactgcttaccactacctgatacatatcaatccattggaaagagtaatgagaatt |
224 |
Q |
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| T |
3373851 |
tctgcgtttctagcttctgctcatgctgttcatttgccataaaactgccgaccactacctgatacatatcaatccattggaaagagtactgagaatt |
3373755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 3403371 - 3403223
Alignment:
| Q |
109 |
gttgaagtcacctcattttcctgtgtttttagcatctgctcagactgttcatttcccagaaaactgcttaccactacctgatacatatcaatccattgga |
208 |
Q |
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|||||| | |||||||| | ||||||||||||| |||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3403371 |
gttgaaattacctcattattctgtgtttttagcttctgctca---tgttcacttggcagaaaactgcctaccactacctgatacatatcaatccattgga |
3403275 |
T |
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| Q |
209 |
aagagtaatgagaattgcatagacttttcactgagaattagttaccacaaat |
260 |
Q |
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|||||| |||| ||||||||| |||| ||||| || | || ||||||||||| |
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| T |
3403274 |
aagagtgatgataattgcataaacttgtcacttagtactaattaccacaaat |
3403223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 3379931 - 3379880
Alignment:
| Q |
183 |
tacctgatacatatcaatccattggaaagagtaatgagaattgcatagactt |
234 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||| ||| |||| |
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| T |
3379931 |
tacctgacacatatcaatccattggaaagagtaattagaattgaataaactt |
3379880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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