View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_69 (Length: 325)
Name: NF3223_low_69
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 31537385 - 31537699
Alignment:
| Q |
2 |
tattcaaatgttctgtgctccttttgcagttgagcacaagtttgttggaattatatatgcacaatacagcttgccatgcaacttgtccatttgtatatct |
101 |
Q |
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| T |
31537385 |
tattcaaatgttctgtgctccttttgcagttgagcacaagtttgttggaattatatatgcacaatacagcttgccatgcaacttgtccatttgtatatct |
31537484 |
T |
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| Q |
102 |
aagtgaacttaccttacaattatatgcactaatacaacttgtaatgttagaaattaacaattaattatttt-nnnnnnntgtcagaaacactgatggaaa |
200 |
Q |
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| T |
31537485 |
aattgaagttaccttcaaattatatgcactaatacaacttgtaatgttagaaattgacaactaattattttaaataaaatgtgaaaaacattgatggaaa |
31537584 |
T |
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| Q |
201 |
cgtctaagcaactttaaaacatggttagacatctttctgttttgaagtgttcttcactaaaaaacagttgcaacaaggtaattaaataatgccataagtt |
300 |
Q |
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| T |
31537585 |
cgtctaagcaactttaaaacatggttagacatctttctgttttgaagtgttcttcactaaaaaacagttgcaacaaggtaattaaataatgccataagtt |
31537684 |
T |
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| Q |
301 |
attgaatattgatga |
315 |
Q |
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| T |
31537685 |
attgaatattgatga |
31537699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 31532103 - 31532216
Alignment:
| Q |
2 |
tattcaaatgttctgtgctccttttgcagttgagcacaagtttgttggaattatatatgcacaatacagcttgccatgcaacttgtccatttgtatatct |
101 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31532103 |
tattcaaatgttatgtgctccttttgcagttgagcacaagtttgttggaattttatatgcacaatacagcttgccatgcaacttgtccatttgtatattt |
31532202 |
T |
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| Q |
102 |
aagtgaacttacct |
115 |
Q |
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| T |
31532203 |
aagtgaagttacct |
31532216 |
T |
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