View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_7 (Length: 598)
Name: NF3223_low_7
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 52730779 - 52731371
Alignment:
| Q |
1 |
tataatagtttcacggtataacaacaaacacaatttaaaacaatgatttccattgatttttcttcttattttactttaaattaactaactaatgatttgt |
100 |
Q |
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| T |
52730779 |
tataatagtttcacggtataaccacaaacacaatttaaaaccatgatttccatcgatttttcttcttattttactttaaattaactaactaatgatttgt |
52730878 |
T |
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| Q |
101 |
aggttatgagtgggaaaagaaaatttgcatacccgacaagggcaagaccaaagaactgcaagagaaagttgaaagtaatagctggcctctccttcctgaa |
200 |
Q |
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| T |
52730879 |
aggttatgagtgggaaaagaaaatttgcatacccgacaagggcaagaccaaagaactgcaagagaaagttgaaagtaatagctggcctctccttcctgaa |
52730978 |
T |
|
| Q |
201 |
cnnnnnnnnnnnt-------ggaaactaatcaaatttgcaattaacatattgtaaacttatgttatgtgcaccactaaacttttattttaattagtgaag |
293 |
Q |
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| T |
52730979 |
caagaataaaaataaaaaatggaaactattcaaatttgcaattaacatattgtaaacttatgttatgtgcaccactaaacttttatgttaattagtgaag |
52731078 |
T |
|
| Q |
294 |
ataacactaggactaacttttccaagaagtaggcaaaaggaaggaggagaagaaaagcaataatattgcggtaaactgggaaaacaagtttgctaacacc |
393 |
Q |
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| T |
52731079 |
ataacactaggactaacttttccaagaagtaggcaaaaggaaggaggagaagaaaagcaataatattgcggtaaactgggaaaacaagtttgctaacacc |
52731178 |
T |
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| Q |
394 |
catgttaagggcagctcttgagacgacatggaaaccagcatatccaaactgcagggccaacatggccgcatgcagctgaaaccgttctggtatggagcac |
493 |
Q |
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| T |
52731179 |
catgttaagggcagctcttgagacgacatggaaaccagcatatccaaactgcagggccaacatggccgcatgcagctgaaaccgttctggtatggagcac |
52731278 |
T |
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| Q |
494 |
cacattctccccgaagatccacctgaatcagccattactgtactatggagctagtcttgttattctaagataagattattaagatgggagagg |
586 |
Q |
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| T |
52731279 |
cacattctccccgaagatccacctgaatcagccattactgtactatggagctagtcttgttattctaagataagattattaagaagggagagg |
52731371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 306 - 474
Target Start/End: Original strand, 7370192 - 7370360
Alignment:
| Q |
306 |
ctaacttttccaagaagtaggcaaaaggaaggaggagaagaaaagcaataatattgcggtaaactgggaaaacaagtttgctaacacccatgttaagggc |
405 |
Q |
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|||||||||||||||| || ||||| |||||||||||||| |||||||| || || | || || |||||||||||||||||||| ||||||||||| || |
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| T |
7370192 |
ctaacttttccaagaaataagcaaatggaaggaggagaagcaaagcaatgatgtttctatagacagggaaaacaagtttgctaactcccatgttaagtgc |
7370291 |
T |
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| Q |
406 |
agctcttgagacgacatggaaaccagcatatccaaactgcagggccaacatggccgcatgcagctgaaa |
474 |
Q |
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| T |
7370292 |
agctcttgaaacaacatggaaaccagcataaccaaactgcaaggccaacatggccacatgcagctgaaa |
7370360 |
T |
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