View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_70 (Length: 322)

Name: NF3223_low_70
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_70
NF3223_low_70
[»] chr6 (1 HSPs)
chr6 (6-308)||(31133954-31134253)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 31133954 - 31134253
Alignment:
Q  6 gtatcggtgttggtgctggtgctggtgccggggataatataattgagctattgtcagcagtggcattgggacaatgtgtaccattactgcaaactataca 105  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31133954 gtatcggtgttggtgttggtgctggtgccgaggataatgtaattgagctattgtcagcagtggcattgggacaatgtgtaccattactgcaaactatata 31134053  T
Q  106 cagcagaattttgttcatattagtaaaacaaatattctgacaaaaataattcctgcatatgaatccaaagcctaggtttgcacttttatt-ttctatacg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  31134054 cagcagaattttgttcatattagtaaaacaaatattctgacaaaaataattcctgcatatgaattcaaagcctaggtttgcacttttattattctatacg 31134153  T
Q  205 tgggaaaactaaatctgagtnnnnnnnnncctatagaagggtgaatatacataccaactttaagtctaggtgatataggactagggggtaacaacgatga 304  Q
    ||||||||||||||||||||         ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  31134154 tgggaaaactaaatctgagt----aaaaacctgtagatgggtgaatatacataccaactttaagtctaggtgatataggactaggcagtaacaacgatga 31134249  T

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