View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_74 (Length: 308)
Name: NF3223_low_74
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 54075259 - 54075543
Alignment:
| Q |
1 |
ttgcatccagatccgtctgatttgggttcgaattccaaaattggtgtttccctcgagattattggagaaaacatcgtggttccgtccgtagcgtattaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075259 |
ttgcatccagatccgtctgatttgggttcgaattccgaaattggagtttccctcgagattattggagaaaacatcgtggttccgtccgtagcgtattaca |
54075358 |
T |
|
| Q |
101 |
ctcccaggcccaataaacccaattctaagcccgtggctgttcaaaagtttgggcctccggcccagcccaaatatttcctttgtgcatgcacgatggttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075359 |
ctcccaggcccaataaacccaattctaagcccgtggcagttcaaaactttgggcctccggcccagcccaaatatttcctttgtgcatgcacgatggttta |
54075458 |
T |
|
| Q |
201 |
taatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgataatggaagc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075459 |
taatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgataatggaagc |
54075543 |
T |
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