View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_77 (Length: 297)
Name: NF3223_low_77
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 29525818 - 29525543
Alignment:
| Q |
1 |
agataagattaacagcaagaaatggtaagagtattgattgagggattcatactgattcttaaaggagaatcaatgatggtgctctagatgtgtaaaagct |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29525818 |
agataagattaaccgcaagaaatggtaagagtattgattgagggattcatagtgattcttaaaggagaatcaatgatggtgctctagatgtgtaaaaact |
29525719 |
T |
|
| Q |
101 |
caattatatatctcagggatgtgggaaaacaattatctgaactttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525718 |
caattatatatctcagggatgtgggaaaacaattatctgaattttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttataattct |
29525619 |
T |
|
| Q |
201 |
tattctgtaggaatttatagttttcttgtttactgttactgtttataattctttatttccgccaaaaatgtctttta |
277 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29525618 |
tgttctgtaggaatttatagttttcttg-ttactgttactgtttataattctttatttctgccaaaaatgtctttta |
29525543 |
T |
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