View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_78 (Length: 295)

Name: NF3223_low_78
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_78
NF3223_low_78
[»] chr1 (1 HSPs)
chr1 (1-277)||(35140644-35140920)
[»] chr3 (15 HSPs)
chr3 (1-272)||(6244779-6245050)
chr3 (3-275)||(6258685-6258957)
chr3 (1-275)||(13270825-13271099)
chr3 (1-275)||(6168374-6168648)
chr3 (2-275)||(6591626-6591899)
chr3 (2-275)||(6916584-6916857)
chr3 (5-275)||(6141769-6142039)
chr3 (2-275)||(6899571-6899844)
chr3 (2-274)||(7749486-7749758)
chr3 (4-248)||(6265195-6265445)
chr3 (15-128)||(6882134-6882247)
chr3 (177-259)||(6722527-6722609)
chr3 (204-248)||(6882026-6882070)
chr3 (106-245)||(5280166-5280305)
chr3 (179-240)||(5298236-5298297)
[»] chr7 (1 HSPs)
chr7 (148-243)||(6573733-6573828)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 35140644 - 35140920
Alignment:
1 atgaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactattt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
35140644 atgaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattctgccattctgggctggtaagtgctattt 35140743  T
101 catcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35140744 catcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggaca 35140843  T
201 tgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggactaaa 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35140844 tgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggactaaa 35140920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 6245050 - 6244779
Alignment:
1 atgaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactattt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
6245050 atgaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtacaattt 6244951  T
101 catcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggaca 200  Q
    |||| ||||||||||| || ||||||||  ||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
6244950 catcatgcatgatcttgtccatgatttagcgacatcaatgtcaggagaattctgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggaca 6244851  T
201 tgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaagga 272  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
6244850 cgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcagattcataacattaaagga 6244779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 275
Target Start/End: Complemental strand, 6258957 - 6258685
Alignment:
3 gaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactatttca 102  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||||    
6258957 gaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcttttttccaaccatcagcgattatgccattctgggctggtaagtactatttca 6258858  T
103 tcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacatg 202  Q
    || |||||||||||||||||||||||  ||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |    
6258857 tcatgcatgatcttatcaatgatttagcgacatcaatgtcaggagaattctgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacacg 6258758  T
203 tcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggacta 275  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
6258757 tcacatttggtgccgccttgatttggaagatggtgatagaaaactaaagcagattcataacattaaaggacta 6258685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 13270825 - 13271099
Alignment:
1 atgaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactattt 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
13270825 atgaagaagagttgggtaataaattcttcaatgatctagtgtcaatttcgtttttccaacaatcagcaattgtgccattctgggctggtaagtactattt 13270924  T
101 catcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggaca 200  Q
    |||| ||||||||||| || ||||||||  ||||||||||| ||| |||||  ||||||||||||||||||||||||||||| |||||||||||||||||    
13270925 catcatgcatgatcttgtccatgatttagcgacatcaatgtcaggggaattctgcttacgaatagagggtgtgaaagtgcaatatatccctcaaaggaca 13271024  T
201 tgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggacta 275  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
13271025 cgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcagattcataacattaaaggacta 13271099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 6168648 - 6168374
Alignment:
1 atgaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactattt 100  Q
    |||||||||| ||||||||| |||||||  || |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
6168648 atgaagaagagttgggtaatgaattctttgatcatctagtgtcaatgtcatttttccaacaatcagcaattatgccattatgggctggtaagtactattt 6168549  T
101 catcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggaca 200  Q
    |||| |||||||||||  || |||||||  || |||| ||  ||||||||  | |||||||||||||||||  || ||||||||||||||||||||||||    
6168548 catcatgcatgatcttgccagtgatttagcgaaatcattgacaggagaatcccacttacgaatagagggtgataacgtgcaagatatccctcaaaggaca 6168449  T
201 tgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggacta 275  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||    
6168448 cgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcagattcgtgacattaaaggacta 6168374  T

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Target: chr3; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 6591626 - 6591899
Alignment:
2 tgaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactatttc 101  Q
    ||||||| | ||||| ||| ||||||||||| ||||||||||||| |||||||||||| |||||| || ||||||||| |||||||| ||| |||| |||    
6591626 tgaagaaaagttgggcaatgaattcttcaatcatctagtgtcaatatcgtttttccaacaatcagtaactatgccattatgggctggcaagcactacttc 6591725  T
102 atcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacat 201  Q
    ||| ||||||||||| |||||||||||   | |||| ||| |||||||||  |||||  |||||||||||  || ||||||||||||||| | ||||||     
6591726 atcatgcatgatcttgtcaatgatttagcaaaatcagtgtcaggagaattctgcttagaaatagagggtggcaacgtgcaagatatccctaataggacac 6591825  T
202 gtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggacta 275  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
6591826 gtcatatttggtgctgccttgatttggaagatggtgatagaaaactgaagcagattcataaaattaaaggacta 6591899  T

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Target: chr3; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 6916857 - 6916584
Alignment:
2 tgaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactatttc 101  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||| || |||||||||  ||||| ||||||||||   ||||| |||||| |||| ||     
6916857 tgaagaagagttgggtaatgaatttttcaatgatctagtgtcaatatcatttttccaacgatcagtaattatgccacgatgggcaggtaagcactacttt 6916758  T
102 atcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacat 201  Q
     || ||||||||||| |||||||||||   | |||| |||  |||||||| ||||| ||||||||| |||  || ||||||||||||||| ||||||||     
6916757 gtcatgcatgatcttgtcaatgatttagcaaaatcagtgtcgggagaattccgcttccgaatagagagtgaaaacgtgcaagatatccctaaaaggacac 6916658  T
202 gtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggacta 275  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
6916657 gtcatatttggtgctgccttgatttggaagatggtgatagaaaactaaagcagattcataaaattaaaggacta 6916584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 275
Target Start/End: Complemental strand, 6142039 - 6141769
Alignment:
5 agaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactatttcatc 104  Q
    |||||| || |||||| |||||||| || ||||||||||||| || ||||||||| |||||| |||||||||||| ||| ||||||||||||| ||||      
6142039 agaagagttaggtaatgaattcttcgattatctagtgtcaatatcatttttccaacaatcagtaattatgccattatggtctggtaagtactacttcact 6141940  T
105 gtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacatgtc 204  Q
     ||||||||||| |||||||||||  || |||| ||  | ||||||  ||||||||||| || ||||  || ||||||||||||  | |||||||| |||    
6141939 atgcatgatcttgtcaatgatttagcgaaatcattgacaagagaatcccgcttacgaatcgaaggtgataacgtgcaagatatcaatgaaaggacacgtc 6141840  T
205 acatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggacta 275  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
6141839 acatttggtgttgccttgatttggaagatggtgatagaaaactaaagcatattcataacattaaaggacta 6141769  T

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Target: chr3; HSP #8
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 6899844 - 6899571
Alignment:
2 tgaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactatttc 101  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||  | ||||||||  ||||| ||||||||||||| ||||||||||| ||||| |||    
6899844 tgaagaagagttgggtaatgaattcttcaacgatctagtgtcaataacatttttccagcaatcaacaattatgccattatgggctggtaaatactacttc 6899745  T
102 atcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacat 201  Q
    ||| ||||||||||| |  ||||||||  || || | ||| |||||||||||||||| ||||||||||||  ||  |||||||||||||| |||||||      
6899744 atcatgcatgatcttgtatatgatttagcgaaattagtgtcaggagaatttcgcttaagaatagagggtgataacctgcaagatatccctgaaaggacgc 6899645  T
202 gtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggacta 275  Q
    | || |||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||| ||||||    
6899644 gccagatttggtgctgccttgatttggaagatggtgatagaaaactagagcatattcttaaaattaagggacta 6899571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 274
Target Start/End: Complemental strand, 7749758 - 7749486
Alignment:
2 tgaagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactatttc 101  Q
    ||||||| | ||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||| || |||||| || ||||||||||| ||||| |||    
7749758 tgaagaacagttgggtaatgaattcttcaattatctagtgtcaatatcgtttttccaacaatcagtaactatgcctttatgggctggtaaatactacttc 7749659  T
102 atcgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacat 201  Q
    ||| || | |||||| |||||||||||   | |||| |||  ||||||||  ||||| ||||||||| ||  || |||||||| |||||| |||||||      
7749658 atcatgaacgatcttgtcaatgatttagcaaaatcagtgtcgggagaattctgcttaagaatagaggatggtaatgtgcaagaaatccctaaaaggacgc 7749559  T
202 gtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattcataacattaaaggact 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||| |||||    
7749558 gtcacatttggtgctgccttgatttggaagatggtgatagaaaactagatcatattcataaaattaagggact 7749486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 6265445 - 6265195
Alignment:
4 aagaagaattgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactatttcat 103  Q
    ||||||| || || ||| |||||||| || | |||||||||||||| ||||||||| |||||| | | |||||||| ||| | ||||||| ||| || ||    
6265445 aagaagagttagggaatgaattcttcgatcaactagtgtcaatgtcatttttccaacaatcagtattgatgccattatggaccggtaagtgctactttat 6265346  T
104 cgtgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgctt------acgaatagagggtgtgaaagtgcaagatatccctcaaagg 197  Q
    | ||||||||||| |||||||||||  || |||| ||| |||||| || || ||      ||||||||||||||  ||  || ||||||| ||| |||||    
6265345 catgcatgatcttgtcaatgatttagcgaaatcagtgtcaggagagttccgattgcgaatacgaatagagggtgataacatgaaagatatacctaaaagg 6265246  T
198 acatgtcacatttggtgctgccttgatttggaagatggtgatagaaaacta 248  Q
    ||| ||||| | |||||||||||||||||||||||||||||||||||||||    
6265245 acacgtcacgtatggtgctgccttgatttggaagatggtgatagaaaacta 6265195  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 6882247 - 6882134
Alignment:
15 ggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattatgccattctgggctggtaagtactatttcatcgtgcatgatc 114  Q
    |||||| ||||||||||| || | |||||||| || ||||||||| |||||| |||||||||||| |||||||  || ||||| ||| || |||||||||    
6882247 ggtaatgaattcttcaatcatttggtgtcaatatcttttttccaacaatcagtaattatgccattatgggctgacaaatactacttcgtcatgcatgatc 6882148  T
115 ttatcaatgattta 128  Q
    || |||||||||||    
6882147 ttgtcaatgattta 6882134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 6722527 - 6722609
Alignment:
177 gtgcaagatatccctcaaaggacatgtcacatttggtgctgccttgatttggaagatggtgatagaaaactaaagcaaattca 259  Q
    |||||||||||| |  |||||||| || ||||||||||||||||||||||| | |||||||| ||||||||| |||| |||||    
6722527 gtgcaagatatctcagaaaggacacgtaacatttggtgctgccttgatttgaaggatggtgacagaaaactagagcatattca 6722609  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 6882070 - 6882026
Alignment:
204 cacatttggtgctgccttgatttggaagatggtgatagaaaacta 248  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
6882070 cacatttggtgctgccttgattttgaagatggtgatagaaaacta 6882026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 245
Target Start/End: Complemental strand, 5280305 - 5280166
Alignment:
106 tgcatgatcttatcaatgatttaatgacatcaatgttaggagaatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacatgtca 205  Q
    ||||||||||| ||| |||||||   | |||| ||| ||||||||||   ||||||||||||||||  |  ||||||||||||||| ||||  || | ||    
5280305 tgcatgatcttgtcattgatttagcaagatcagtgtcaggagaattttctttacgaatagagggtgatagggtgcaagatatccctgaaagagcacgcca 5280206  T
206 catttggtgctgccttgatttggaagatggtgatagaaaa 245  Q
     ||||||||||  ||||||| | || ||||| ||||||||    
5280205 tatttggtgctctcttgattggaaatatggttatagaaaa 5280166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 5298297 - 5298236
Alignment:
179 gcaagatatccctcaaaggacatgtcacatttggtgctgccttgatttggaagatggtgata 240  Q
    ||||||||| ||| |||||||| |||||||||||||||  ||||| ||  ||||||||||||    
5298297 gcaagatattcctgaaaggacacgtcacatttggtgctctcttgaattaaaagatggtgata 5298236  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 6573733 - 6573828
Alignment:
148 aatttcgcttacgaatagagggtgtgaaagtgcaagatatccctcaaaggacatgtcacatttggtgctgccttgatttggaagatggtgatagaa 243  Q
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6573733 aattttgcttacaaattgagggtgatagggtgcaagatatatctgaaaggacacgtcatatttggtgctcccttggtttggaagatggtgctagaa 6573828  T

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