View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_80 (Length: 280)
Name: NF3223_low_80
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 15920388 - 15920653
Alignment:
| Q |
17 |
aaatacaacataaaatatatgtggaaaattaaaataattttgaaaga---gaatatcaaattgtccgcaagagctagaaatttagttattactcaataaa |
113 |
Q |
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|||||||||||||||||| ||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15920388 |
aaatacaacataaaatatctgtggccaattcaaataattttgaaagaagagaatatgaaattgtccgcaagagctagaaatttagtta---ctcaataaa |
15920484 |
T |
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| Q |
114 |
aa------------------agttatctactatggataaaaggctttcgcaactcaaagaggcacaagaaaggtttgatcaaaataatcgaatttcgatt |
195 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
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| T |
15920485 |
aaggttatctactattcaaaagttatctactatggataaaaggctttcacaactcaaagaggcacaagaaaggtttgatcgaaataatgaaattttgatt |
15920584 |
T |
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| Q |
196 |
cctaggatccaaagggttccaatgtttttgcggcaaaatgaaagattttataagtattgtacaccaaag |
264 |
Q |
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| T |
15920585 |
cctaggatccaaagggttccaatgtttttgcggcaaaatgaaagattttataagtattgtacaccaaag |
15920653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 113 - 264
Target Start/End: Complemental strand, 15874595 - 15874444
Alignment:
| Q |
113 |
aaaagttatctactatggataaaaggctttcgcaactcaaagaggcacaagaaaggtttgatcaaaataatcgaatttcgattcctaggatccaaagggt |
212 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
15874595 |
aaaagttatctactatggataaaagactttcgcaactcaaagaggcacaagaaaggtttgatcgaaataatcgaatttcgattcctaagatccaaagggt |
15874496 |
T |
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| Q |
213 |
tccaatgtttttgcggcaaaatgaaagattttataagtattgtacaccaaag |
264 |
Q |
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| T |
15874495 |
tccaatatttttgcggcaaaatgaaagattttataagtattgttcaccaaag |
15874444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 113 - 264
Target Start/End: Original strand, 15899474 - 15899625
Alignment:
| Q |
113 |
aaaagttatctactatggataaaaggctttcgcaactcaaagaggcacaagaaaggtttgatcaaaataatcgaatttcgattcctaggatccaaagggt |
212 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |
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| T |
15899474 |
aaaagttatcttctatggataaaaggctttcgcaactcaaagaggcacaagaaaggtttgatcgaaataatgaaattttgattcctaggatccaaagggt |
15899573 |
T |
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| Q |
213 |
tccaatgtttttgcggcaaaatgaaagattttataagtattgtacaccaaag |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15899574 |
tccaatgtttttgcggcaaaatgaaagattttataagtattgtacaccaaag |
15899625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 14049609 - 14049485
Alignment:
| Q |
129 |
ggataaaaggctttcgcaactcaaagaggcacaagaaaggtttgatcaaaataatcgaatttcgattcctaggatccaaagggttccaatgtttttgcgg |
228 |
Q |
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||||||||||||||| ||||| ||||||| |||| || |||||| ||||||| || |||||| ||||||| ||||||||||||||||| ||||||| | |
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| T |
14049609 |
ggataaaaggctttcccaactaaaagaggtacaactaaagtttgagcaaaatagtcaaatttcaattcctaagatccaaagggttccaaagtttttgaga |
14049510 |
T |
|
| Q |
229 |
caaaatgaaagattttataagtatt |
253 |
Q |
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||||||||||||||||||||||||| |
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| T |
14049509 |
caaaatgaaagattttataagtatt |
14049485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 14060997 - 14060859
Alignment:
| Q |
126 |
tatggataaaaggctttcgcaactcaaagaggcacaagaaaggtttgatcaaaataatcgaatttcgattcctaggatccaaagggttccaatgtttttg |
225 |
Q |
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||||||||||||| |||| ||||| |||||||||||| | |||||| ||||||| | |||||| ||||||| ||| ||||||||||| | ||||||| |
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| T |
14060997 |
tatggataaaaggatttcccaactaaaagaggcacaactgaagtttgagcaaaatagtaaaatttcaattcctaagattcaaagggttcctaagtttttg |
14060898 |
T |
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| Q |
226 |
cggcaaaatgaaagattttataagtattgtacaccaaag |
264 |
Q |
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|| |||||||||||||||||||||||||| |||||||| |
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| T |
14060897 |
cgacaaaatgaaagattttataagtattgctcaccaaag |
14060859 |
T |
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