View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_81 (Length: 276)

Name: NF3223_low_81
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_81
NF3223_low_81
[»] chr3 (4 HSPs)
chr3 (7-259)||(19148611-19148862)
chr3 (7-47)||(24688419-24688459)
chr3 (7-47)||(42394436-42394476)
chr3 (7-47)||(54237139-54237179)
[»] chr7 (4 HSPs)
chr7 (7-47)||(27393277-27393317)
chr7 (7-40)||(38160596-38160629)
chr7 (7-47)||(24001029-24001069)
chr7 (7-47)||(42538448-42538488)
[»] chr5 (5 HSPs)
chr5 (7-47)||(33801512-33801552)
chr5 (7-47)||(2614666-2614706)
chr5 (7-47)||(18034025-18034065)
chr5 (7-47)||(22512348-22512388)
chr5 (7-47)||(41334680-41334720)
[»] chr2 (4 HSPs)
chr2 (8-47)||(43490419-43490458)
chr2 (7-47)||(1750457-1750497)
chr2 (7-47)||(12302270-12302310)
chr2 (7-47)||(19047200-19047240)
[»] chr8 (8 HSPs)
chr8 (7-40)||(2547046-2547079)
chr8 (7-40)||(18066735-18066768)
chr8 (7-48)||(42197452-42197493)
chr8 (7-47)||(11582809-11582849)
chr8 (7-47)||(26125678-26125718)
chr8 (7-47)||(36743500-36743540)
chr8 (7-47)||(42295238-42295278)
chr8 (7-47)||(45397359-45397399)
[»] chr6 (4 HSPs)
chr6 (7-40)||(21279979-21280012)
chr6 (7-47)||(7292790-7292830)
chr6 (7-47)||(9698350-9698390)
chr6 (7-47)||(24204004-24204044)
[»] chr4 (2 HSPs)
chr4 (7-40)||(45490330-45490363)
chr4 (7-47)||(25051736-25051776)
[»] scaffold0038 (1 HSPs)
scaffold0038 (7-47)||(112698-112738)
[»] chr1 (1 HSPs)
chr1 (7-47)||(5489819-5489859)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 19148862 - 19148611
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgtgtgaataaagagtattcatataatatttttcttnnnnnnnnn-ggacaaacattacatt 105  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||  |||||||| ||||| |||          ||||||||||||||||    
T  19148862 gtgagataaatttactaaaatgtccctaatacatagggtgtgtgaataaagagt--tcatataacattttccttaaaaaaaaaaggacaaacattacatt 19148765  T
Q  106 attttccatatgctcatgaatgctggaatattcaaattccaaaacgttggacgaccactttctacaactttatacgaatcaaggacaatgagaaacaatt 205  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19148764 attttccatatgctcatgaatgctggaatattcaaatttcaaaacgttggacgaccgctttctacaactttatacgaatcaaggacaatgagaaacaatt 19148665  T
Q  206 tatcaattacatagaaataatacgttgtggaaattctattcaagtgatttaact 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19148664 tatcaattacatagaaataatacgttgtggaaattctattcaagtgatttaact 19148611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 24688419 - 24688459
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  24688419 gtgagatgaacttaccaaaatatccctaatacatagggtgt 24688459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 42394436 - 42394476
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  42394436 gtgagatgaacttaccaaaatatccctaatacatagggtgt 42394476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 54237179 - 54237139
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  54237179 gtgagatgaacttaccaaaatatccctaatacatagggtgt 54237139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 27393277 - 27393317
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  27393277 gtgagatgaacttacaaaaatatccctaatacatagagtgt 27393317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 38160596 - 38160629
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacat 40  Q
    |||||||||| |||||||||||||||||||||||    
T  38160596 gtgagatgaagttactaaaatatccctaatacat 38160629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 24001029 - 24001069
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  24001029 gtgagatgaacttaccaaaatatccctaatacatagggtgt 24001069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 42538448 - 42538488
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  42538448 gtgagatgaacttaccaaaatatccctaatacatagggtgt 42538488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 33801552 - 33801512
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  33801552 gtgagatgaacttactaaaatatccctaatacatggagtgt 33801512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 2614666 - 2614706
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  2614666 gtgagatgaacttaccaaaatatccctaatacatagggtgt 2614706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 18034065 - 18034025
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  18034065 gtgagatgaacttacaaaaatatccctaatacatagggtgt 18034025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 22512388 - 22512348
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  22512388 gtgagatgaacttaccaaaatatccctaatacatggagtgt 22512348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 41334680 - 41334720
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  41334680 gtgagatgaacttaccaaaatatccctaatacatagggtgt 41334720  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 43490419 - 43490458
Alignment:
Q  8 tgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  43490419 tgagatgaacttaccaaaatatccctaatacatagagtgt 43490458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 1750497 - 1750457
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  1750497 gtgagatgaacttacaaaaatatccctaatacatagggtgt 1750457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 12302270 - 12302310
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  12302270 gtgagatgaacttacaaaaatatccctaatacatagggtgt 12302310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 19047240 - 19047200
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  19047240 gtgagatgaacttaccaaaatatccctaatacatagggtgt 19047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 2547079 - 2547046
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacat 40  Q
    |||||||||| |||||||||||||||||||||||    
T  2547079 gtgagatgaacttactaaaatatccctaatacat 2547046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 18066735 - 18066768
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacat 40  Q
    |||||||||| |||||||||||||||||||||||    
T  18066735 gtgagatgaaattactaaaatatccctaatacat 18066768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 42197452 - 42197493
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgtg 48  Q
    |||||||||| |||| |||||||||||||||||||| |||||    
T  42197452 gtgagatgaacttaccaaaatatccctaatacatagtgtgtg 42197493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 11582849 - 11582809
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  11582849 gtgagatgaacttaccaaaatatccctaatacatagggtgt 11582809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 26125718 - 26125678
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  26125718 gtgagatgaacttaccaaaatatccctaatacatagggtgt 26125678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 36743500 - 36743540
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  36743500 gtgagatgaacttaccaaaatatccctaatacatagggtgt 36743540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 42295278 - 42295238
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  42295278 gtgagatgaacttaccaaaatatccctaatacatggagtgt 42295238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 45397399 - 45397359
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  45397399 gtgagatgaacttacaaaaatatccctaatacatagggtgt 45397359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 21280012 - 21279979
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacat 40  Q
    ||||||||||||||| ||||||||||||||||||    
T  21280012 gtgagatgaatttaccaaaatatccctaatacat 21279979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 7292830 - 7292790
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  7292830 gtgagatgaacttaccaaaatatccctaatacatagggtgt 7292790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9698350 - 9698390
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  9698350 gtgagatgaacttaccaaaatatccctaatacatagggtgt 9698390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 24204004 - 24204044
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  24204004 gtgagatgaacttaccaaaatatccctaatacatggagtgt 24204044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 45490330 - 45490363
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacat 40  Q
    ||||||||||||||||||| ||||||||||||||    
T  45490330 gtgagatgaatttactaaagtatccctaatacat 45490363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 25051776 - 25051736
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  25051776 gtgagatgaacttaccaaaatatccctaatacatagggtgt 25051736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 112738 - 112698
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  112738 gtgagatgaacttaccaaaatatccctaatacatagggtgt 112698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 5489859 - 5489819
Alignment:
Q  7 gtgagatgaatttactaaaatatccctaatacatagagtgt 47  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  5489859 gtgagatgaacttaccaaaatatccctaatacatagggtgt 5489819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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