View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_84 (Length: 274)
Name: NF3223_low_84
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_84 |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 33952524 - 33952774
Alignment:
| Q |
6 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttattattatattttcttctaggctacttaag |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
33952524 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactatgactattattattatattttcttctaggctacttaaa |
33952623 |
T |
|
| Q |
106 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952624 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
33952723 |
T |
|
| Q |
206 |
atgcaagtgacacggacaataacaactacaataattacttcatcatccttc |
256 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33952724 |
atgcaagtgacacggacaataacaactacaataatcacttcatcatccttc |
33952774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 33975124 - 33975380
Alignment:
| Q |
6 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttat------tattatattttcttctaggcta |
99 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
33975124 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattattattatattttcttctaggcta |
33975223 |
T |
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| Q |
100 |
cttaagttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
199 |
Q |
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| T |
33975224 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
33975323 |
T |
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| Q |
200 |
ggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttc |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33975324 |
ggaaaaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttc |
33975380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 33959824 - 33960080
Alignment:
| Q |
6 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttat------tattatattttcttctaggcta |
99 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
33959824 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattattattatattttcttctaggcta |
33959923 |
T |
|
| Q |
100 |
cttaagttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959924 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
33960023 |
T |
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| Q |
200 |
ggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttc |
256 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
33960024 |
ggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttc |
33960080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 33992044 - 33992293
Alignment:
| Q |
6 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttattattatattttcttctaggctacttaag |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
33992044 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattatattttcttctaggctacttaaa |
33992143 |
T |
|
| Q |
106 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
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| T |
33992144 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatc-tttaagtaattaattaacctcttctcatttaccaggaaaa |
33992242 |
T |
|
| Q |
206 |
atgcaagtgacacggacaataacaactacaataattacttcatcatccttc |
256 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
33992243 |
atgcaagtgacacagacaataacaactacaataatcacttcatcatccttc |
33992293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 33942254 - 33942331
Alignment:
| Q |
178 |
attaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttc |
256 |
Q |
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|||||| |||| ||| || |||||||||||||||||||||| || ||| || ||||| ||||| |||||||| |||||| |
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| T |
33942254 |
attaacttctgttcaattcccaggaaaaatgcaagtgacacagaaaattactactac-ataatcacttcatcgtccttc |
33942331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 6 - 256
Target Start/End: Complemental strand, 8278231 - 8277982
Alignment:
| Q |
6 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtactaggactgttattattatattttcttctaggctacttaag |
105 |
Q |
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||||| |||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||| | || |
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| T |
8278231 |
atggaaatcatcaataaattaggcctcatgaatttggctaatgtgataataccaaggtactaggactattattattatattttcttcttggctaataaaa |
8278132 |
T |
|
| Q |
106 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||| |
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| T |
8278131 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtgaaataatttcttatc-tttaagtaactaattaacctctgctcatttacctgaaaaa |
8278033 |
T |
|
| Q |
206 |
atgcaagtgacacggacaataacaactacaataattacttcatcatccttc |
256 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8278032 |
gtgaaagtgacacggacaataacaactacaataatcacttcatcatccttc |
8277982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 2891615 - 2891539
Alignment:
| Q |
176 |
taattaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatc |
252 |
Q |
| |
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|||||| ||| |||||||||||||| ||||||||||||||||| ||||| ||||||| |||| ||||||||||| |
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| T |
2891615 |
taattaccctttgctcatttaccagaaaaaatgcaagtgacacatacaattacaactataatagccacttcatcatc |
2891539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 12246 - 12325
Alignment:
| Q |
177 |
aattaacctctgctcatttaccaggaaaaatgcaagtgacacggacaataacaactacaataattacttcatcatccttc |
256 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||| |
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|
| T |
12246 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttc |
12325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 12115 - 12174
Alignment:
| Q |
6 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataatgccaaggtac |
65 |
Q |
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||||| ||||| |||||||||||| ||||||| |||||||||||||||| |||||||| |
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| T |
12115 |
atggaaatcataaacaaattaggctccatgaatctggctaatgtcataatagcaaggtac |
12174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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