View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_low_86 (Length: 272)

Name: NF3223_low_86
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_low_86
NF3223_low_86
[»] chr2 (6 HSPs)
chr2 (9-145)||(16142307-16142451)
chr2 (75-145)||(16143430-16143500)
chr2 (9-145)||(38728265-38728409)
chr2 (9-145)||(38729896-38730040)
chr2 (11-76)||(472803-472868)
chr2 (226-254)||(38729817-38729845)
[»] chr1 (13 HSPs)
chr1 (9-142)||(50316887-50317028)
chr1 (9-145)||(24438781-24438925)
chr1 (75-145)||(33983256-33983326)
chr1 (75-145)||(24437230-24437300)
chr1 (11-63)||(33981587-33981639)
chr1 (13-65)||(33981645-33981697)
chr1 (217-257)||(24437373-24437413)
chr1 (22-65)||(33485247-33485290)
chr1 (217-268)||(50316760-50316811)
chr1 (225-254)||(33981859-33981888)
chr1 (223-268)||(41669565-41669610)
chr1 (9-65)||(7185778-7185834)
chr1 (81-141)||(33981721-33981781)
[»] chr7 (6 HSPs)
chr7 (9-145)||(11671120-11671264)
chr7 (9-143)||(12180475-12180617)
chr7 (75-145)||(12178638-12178708)
chr7 (1-47)||(21716559-21716605)
chr7 (217-257)||(12178781-12178821)
chr7 (9-65)||(15135459-15135515)
[»] chr8 (3 HSPs)
chr8 (12-145)||(2552490-2552631)
chr8 (9-65)||(27166846-27166902)
chr8 (9-65)||(2552676-2552731)
[»] chr4 (6 HSPs)
chr4 (1-71)||(3068997-3069067)
chr4 (90-143)||(21354613-21354666)
chr4 (217-257)||(21354504-21354544)
chr4 (25-76)||(36887050-36887101)
chr4 (223-268)||(10337523-10337570)
chr4 (223-268)||(42978510-42978557)
[»] chr6 (3 HSPs)
chr6 (75-145)||(1443572-1443642)
chr6 (9-65)||(7678565-7678621)
chr6 (217-257)||(1443715-1443755)
[»] chr3 (2 HSPs)
chr3 (11-76)||(41880007-41880071)
chr3 (9-69)||(30700377-30700437)
[»] chr5 (2 HSPs)
chr5 (9-65)||(27756707-27756763)
chr5 (223-268)||(36619949-36619996)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 16142307 - 16142451
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgtgt--------ggctgacgtggcgttgtttgactt 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||| ||||        | |||||||||||||||||||| |    
T  16142307 cctgtaagttacaaacgttttgattttcggccctcccgtcagcatctgttacaaaaacgctgatgtgtctaacggtgactgacgtggcgttgtttgacgt 16142406  T
Q  101 ggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    ||||||||| |||||||||||||| |||| |||||||||||||||    
T  16142407 ggcaaaacaagcttatgtgtcctttcaggcaagattacagggacc 16142451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 16143500 - 16143430
Alignment:
Q  75 gtggctgacgtggcgttgtttgacttggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    |||||||||||||| ||||||||| |||||||| | |||||||||||||||||| ||||||||||||||||    
T  16143500 gtggctgacgtggcattgtttgacgtggcaaaagaggcttatgtgtccttccagaaaagattacagggacc 16143430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 38728265 - 38728409
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgtg--------tggctgacgtggcgttgtttgactt 100  Q
    |||| |||||||||||||||||||||||||||||||||| |  || |||||| |||| ||||| |||        || ||||| |||||||||||||| |    
T  38728265 cctgcaagttacaaacgttttgattttcgtccctcccgtcataatctgttacgaaaacgctgatgtgtctaacgatgactgacatggcgttgtttgacgt 38728364  T
Q  101 ggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    ||||||||| ||||| ||||| ||| ||| |||||| ||||||||    
T  38728365 ggcaaaacaagcttacgtgtctttcaaggcaagattgcagggacc 38728409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 38730040 - 38729896
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgt--------gtggctgacgtggcgttgtttgactt 100  Q
    |||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||  |||| ||        |||  | ||||||||||||||||| |    
T  38730040 cctgtaagttacaaaccttttgattttcgtccctgccgttagcctctgttacaaaaacactgatgtgtctaacggtgatttacgtggcgttgtttgacgt 38729941  T
Q  101 ggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    ||||||||| ||| | ||||||||| ||| |||||||||| ||||    
T  38729940 ggcaaaacaggctcacgtgtccttctaggcaagattacagagacc 38729896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 472803 - 472868
Alignment:
Q  11 tgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgtgt 76  Q
    ||||||||| |||||||||| |||| |||||| | || | ||| ||||||||||||||| ||||||    
T  472803 tgtaagttataaacgttttgtttttggtccctacagtcatcatctgttacaaaaatgcttacgtgt 472868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 38729845 - 38729817
Alignment:
Q  226 ttccatcttcttcctctctcttccatatt 254  Q
    |||||||||||||||||||||||||||||    
T  38729845 ttccatcttcttcctctctcttccatatt 38729817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 50317028 - 50316887
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgt--------gtggctgacgtggcgttgtttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||        ||| |||||||||||||||||||| |    
T  50317028 cctgtaagttacaaacgttttgattttcgtccctcccgtcagcatctgttacaaaaacgctgatgtgtctaacggtgactgacgtggcgttgtttgacgt 50316929  T
Q  101 ggcaaaacatgcttatgtgtccttccaggaaagattacaggg 142  Q
    ||||||||| | ||||||||||||||| | ||||||| ||||    
T  50316928 ggcaaaacaagtttatgtgtccttccacgcaagattataggg 50316887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 24438925 - 24438781
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgtgt--------ggctgacgtggcgttgtttgactt 100  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| | ||| ||||        | |||||||||||||||||||| |    
T  24438925 cctgtaagttacaaacgttttgattttcgtcccacccgtcagcatctgttacaaaaacgttgatgtgtctaacggtgactgacgtggcgttgtttgacgt 24438826  T
Q  101 ggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    ||||||||| |||||| |||||||||||| ||||||||| |||||    
T  24438825 ggcaaaacaagcttatttgtccttccaggcaagattacaaggacc 24438781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 33983326 - 33983256
Alignment:
Q  75 gtggctgacgtggcgttgtttgacttggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  33983326 gtggctgacgtggcgttgtttgacgtggcaaaacatgcttatgtgtccttccaggcaagattacagggacc 33983256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 24437230 - 24437300
Alignment:
Q  75 gtggctgacgtggcgttgtttgacttggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    ||||||| |||||| ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  24437230 gtggctggcgtggcattgtttgacgtggcaaaacaggcttatgtgtccttctaggaaagattacagggacc 24437300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 33981587 - 33981639
Alignment:
Q  11 tgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaa 63  Q
    |||||||||||||||||||||||||||||| |||||| | ||| |||||||||    
T  33981587 tgtaagttacaaacgttttgattttcgtccatcccgtcaacatgtgttacaaa 33981639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 33981645 - 33981697
Alignment:
Q  13 taagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaa 65  Q
    |||||||||||||||||||||||||| |||||||| ||||| | |||||||||    
T  33981645 taagttacaaacgttttgattttcgtacctcccgtcagcatctattacaaaaa 33981697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 24437373 - 24437413
Alignment:
Q  217 cctttatgtttccatcttcttcctctctcttccatattatt 257  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  24437373 ccttgatgtttccatcttcttcctctctcatccatattatt 24437413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 33485290 - 33485247
Alignment:
Q  22 aacgttttgattttcgtccctcccgttagcatttgttacaaaaa 65  Q
    ||||||||| |||||||||||||||||||| | |||||||||||    
T  33485290 aacgttttgcttttcgtccctcccgttagcttgtgttacaaaaa 33485247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 50316811 - 50316760
Alignment:
Q  217 cctttatgtttccatcttcttcctctctcttccatattattattcttcttct 268  Q
    |||| ||||||||||| ||||||| ||||||||||||| || ||||||||||    
T  50316811 ccttgatgtttccatcctcttcctttctcttccatattcttcttcttcttct 50316760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 33981859 - 33981888
Alignment:
Q  225 tttccatcttcttcctctctcttccatatt 254  Q
    ||||||||||||||||||||||||||||||    
T  33981859 tttccatcttcttcctctctcttccatatt 33981888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 41669610 - 41669565
Alignment:
Q  223 tgtttccatcttcttcctctctcttccatattattattcttcttct 268  Q
    |||||||||||||||||||||| | ||||||| || ||||||||||    
T  41669610 tgtttccatcttcttcctctctttgccatattcttcttcttcttct 41669565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 7185834 - 7185778
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaa 65  Q
    ||||||||||| |||| ||||| |||| |||||| |||| ||||| |||||||||||    
T  7185834 cctgtaagttataaacattttgcttttggtcccttccgtcagcatctgttacaaaaa 7185778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 33981721 - 33981781
Alignment:
Q  81 gacgtggcgttgtttgacttggcaaaacatgcttatgtgtccttccaggaaagattacagg 141  Q
    ||| |||||||||||||  |||||| |||  ||||||||||||| |||| |||||||||||    
T  33981721 gacatggcgttgtttgatgtggcaacacagacttatgtgtcctttcaggcaagattacagg 33981781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 11671264 - 11671120
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgt--------gtggctgacgtggcgttgtttgactt 100  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||| ||        ||| |||||||||||||||||||| |    
T  11671264 cctgtaagttacaaatgttttgattttcgtccctctcgtcagcatctgttacaaaaatgctgatgtgtctaacggtgactgacgtggcgttgtttgacgt 11671165  T
Q  101 ggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    || |||||| |||||||||||||||||   ||||||| |||||||    
T  11671164 ggaaaaacaagcttatgtgtccttccacacaagattatagggacc 11671120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 12180617 - 12180475
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgt--------gtggctgacgtggcgttgtttgactt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||| ||        ||| |||||||||||||||||||| |    
T  12180617 cctgtaagttacaaacgttttgattttcgtccctcccgtcagcatctgttacaaaaacgttgatgtgtctaacggtgactgacgtggcgttgtttgacgt 12180518  T
Q  101 ggcaaaacatgcttatgtgtccttccaggaaagattacaggga 143  Q
    || |||||| |||||| | |||||| ||| |||||||||||||    
T  12180517 ggaaaaacaagcttatttatccttctaggcaagattacaggga 12180475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 12178638 - 12178708
Alignment:
Q  75 gtggctgacgtggcgttgtttgacttggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    ||||||| |||||| ||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||    
T  12178638 gtggctggcgtggcattgtttgacgtgacaaaacaggcttatgtgtccttctaggaaagattacagggacc 12178708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21716605 - 21716559
Alignment:
Q  1 aaacaatgcctgtaagttacaaacgttttgattttcgtccctcccgt 47  Q
    ||||||| |||||||||||  ||| ||||||||||||||||||||||    
T  21716605 aaacaatccctgtaagttaataactttttgattttcgtccctcccgt 21716559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 12178781 - 12178821
Alignment:
Q  217 cctttatgtttccatcttcttcctctctcttccatattatt 257  Q
    |||| ||||||||||||||||||| |||| |||||||||||    
T  12178781 ccttgatgtttccatcttcttcctgtctcatccatattatt 12178821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 15135459 - 15135515
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaa 65  Q
    |||| ||||||  ||| |||||||||||||||||||||| | | |||||||||||||    
T  15135459 cctgcaagttaataactttttgattttcgtccctcccgtcaacttttgttacaaaaa 15135515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 2552490 - 2552631
Alignment:
Q  12 gtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgtgt--------ggctgacgtggcgttgtttgacttggc 103  Q
    |||||||||||| |||||||||||||||| |||||| | |||||||||||||||  |||| ||||        | ||||  |||||||||||||| ||||    
T  2552490 gtaagttacaaatgttttgattttcgtccttcccgtcaacatttgttacaaaaacactgatgtgtctgacggtgactgatatggcgttgtttgacatggc 2552589  T
Q  104 aaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    |||| | ||||||||||||||||||| |||||||||||||||    
T  2552590 aaaagaggcttatgtgtccttccaggcaagattacagggacc 2552631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 27166846 - 27166902
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaa 65  Q
    |||||||||| | | ||||||||||||||| |||||||||||| | |||||||||||    
T  27166846 cctgtaagttgctatcgttttgattttcgttcctcccgttagcttctgttacaaaaa 27166902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 2552731 - 2552676
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaa 65  Q
    ||||| |||||||| |||||||||||||||||||||| | ||||| | |||||||||    
T  2552731 cctgttagttacaa-cgttttgattttcgtccctcccatcagcatctattacaaaaa 2552676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3068997 - 3069067
Alignment:
Q  1 aaacaatgcctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctga 71  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  3068997 aaacaatccctgtaaattacaaatgttttgattttcgtccctcccgttagcatctgttacaaaaatgctga 3069067  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 21354666 - 21354613
Alignment:
Q  90 ttgtttgacttggcaaaacatgcttatgtgtccttccaggaaagattacaggga 143  Q
    ||||||||| |||||||||| ||||||||||||||  |||||||||||||||||    
T  21354666 ttgtttgacgtggcaaaacaggcttatgtgtccttttaggaaagattacaggga 21354613  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 21354544 - 21354504
Alignment:
Q  217 cctttatgtttccatcttcttcctctctcttccatattatt 257  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  21354544 ccttgatgtttccatcttcttcctctctcatccatattatt 21354504  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 36887050 - 36887101
Alignment:
Q  25 gttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgtgt 76  Q
    ||||| ||||||||| ||||||||| ||| ||||||||||||||||| ||||    
T  36887050 gttttcattttcgtctctcccgttaacatctgttacaaaaatgctgatgtgt 36887101  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 10337523 - 10337570
Alignment:
Q  223 tgtttccatcttcttcctctctctt--ccatattattattcttcttct 268  Q
    |||||||||||||||||||||||||  ||||||| || ||||||||||    
T  10337523 tgtttccatcttcttcctctctctttgccatattcttcttcttcttct 10337570  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 42978557 - 42978510
Alignment:
Q  223 tgtttccatcttcttcctctctctt--ccatattattattcttcttct 268  Q
    |||||||||||||||||||||||||  ||||||| || ||||||||||    
T  42978557 tgtttccatcttcttcctctctctttgccatattcttcttcttcttct 42978510  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 1443572 - 1443642
Alignment:
Q  75 gtggctgacgtggcgttgtttgacttggcaaaacatgcttatgtgtccttccaggaaagattacagggacc 145  Q
    ||||||| |||| | ||||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  1443572 gtggctggcgtgacattgtttgacgtggcaaaacaggcttatgtgtctttctaggaaagattacagggacc 1443642  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 7678621 - 7678565
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaa 65  Q
    ||||||||||   ||||||||| |||||||||||||||||||| | |||||||||||    
T  7678621 cctgtaagttgttaacgttttgcttttcgtccctcccgttagcttctgttacaaaaa 7678565  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 1443715 - 1443755
Alignment:
Q  217 cctttatgtttccatcttcttcctctctcttccatattatt 257  Q
    |||| ||||||||||||||||||| |||| |||||||||||    
T  1443715 ccttgatgtttccatcttcttcctatctcatccatattatt 1443755  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 41880007 - 41880071
Alignment:
Q  11 tgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgctgacgtgt 76  Q
    ||||||||| |||||||||||||||||| |||||| | ||||| ||||| ||||||||||| ||||    
T  41880007 tgtaagttataaacgttttgattttcgt-cctcccatcagcatctgttataaaaatgctgatgtgt 41880071  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 30700377 - 30700437
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaatgct 69  Q
    ||||||||||| |||| ||||| |||| |||||| |||| ||||| |||||||||||||||    
T  30700377 cctgtaagttataaacattttgcttttggtccctgccgtcagcatctgttacaaaaatgct 30700437  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 27756763 - 27756707
Alignment:
Q  9 cctgtaagttacaaacgttttgattttcgtccctcccgttagcatttgttacaaaaa 65  Q
    ||||||| ||| |||| ||||| |||| |||||| |||| |||||||||||||||||    
T  27756763 cctgtaaattataaacattttgcttttggtccctgccgtcagcatttgttacaaaaa 27756707  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 36619949 - 36619996
Alignment:
Q  223 tgtttccatcttcttcctctctctt--ccatattattattcttcttct 268  Q
    |||||||||||||||||||||||||  ||||||| || ||||||||||    
T  36619949 tgtttccatcttcttcctctctctttgccatattcttcttcttcttct 36619996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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