View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_88 (Length: 269)
Name: NF3223_low_88
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2909372 - 2909121
Alignment:
| Q |
1 |
tgtttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtga |
100 |
Q |
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| T |
2909372 |
tgtttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtga |
2909273 |
T |
|
| Q |
101 |
aagctatcacttcacatgggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaagttgttgttcgcca |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2909272 |
aagctatcacttcacataggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaagttgttgttcgcca |
2909173 |
T |
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| Q |
201 |
ctcttaccgtgaagcaaaccaatgcacagatgctttggctaactatggttgt |
252 |
Q |
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| T |
2909172 |
ctcttaccgtgaagcaaaccaatgcacagatgctttggctaactatggttgt |
2909121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 37054119 - 37053940
Alignment:
| Q |
45 |
tagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtgaaagctatcacttcacatgggcatcgtagctatggagagaggtcg |
144 |
Q |
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| T |
37054119 |
tagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgtaaaagctatcacttcacatgtgcatgatagctagagaaggaggtag |
37054020 |
T |
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| Q |
145 |
ttagtcgagaagattcatcgattgcttgcacttgattgagaagttgttgttcgccactcttaccgtgaagcaaaccaatgc |
225 |
Q |
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| T |
37054019 |
ctagttgagaagattcatcgcttcctttcacttgattgagaagttgttgtt-atcactcttatcatgaagcaaatcaatgc |
37053940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 31976670 - 31976459
Alignment:
| Q |
9 |
agaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactccttaattattgtgaaagctatc |
108 |
Q |
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| T |
31976670 |
agaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttgacttcttacttgttgtgaaagcaatc |
31976571 |
T |
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| Q |
109 |
acttcacatgggcatcgtagctatggagagaggtcgttagtcgagaagattcatc-gattgcttgcacttgattgagaagttgttgttcgccactcttac |
207 |
Q |
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| T |
31976570 |
acttcacatgagcatggtagttggagaaggaggttgctggttaacaagattcatcactttgcttgcacttgattgagaagttgttgttcatcacttttac |
31976471 |
T |
|
| Q |
208 |
cgtgaagcaaac |
219 |
Q |
| |
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||| || ||||| |
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| T |
31976470 |
cgttaaacaaac |
31976459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 156448 - 156220
Alignment:
| Q |
3 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactccttaattat-----tg |
97 |
Q |
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||||| |||||| |||||||||||||||| | ||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||| || | || |
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| T |
156448 |
tttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgtcatg |
156349 |
T |
|
| Q |
98 |
tgaaagctatcacttc-acatgggcatcgtagctatggagagaggtcgttagtcgagaagattcatcgattgcttgcacttgattgagaagttgttgtt- |
195 |
Q |
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| |||| ||||||||| || ||||||| |||| | ||| ||| ||| |||| || ||||||||||| |||||||||||||||| |||||||||||| |
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| T |
156348 |
tcaaagttatcacttcaacgtgggcatggtagtttgagagggagatcgctagttgacaagattcatcgcttgcttgcacttgattcggaagttgttgttc |
156249 |
T |
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| Q |
196 |
cgccactcttaccgtgaagcaaaccaatg |
224 |
Q |
| |
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| T |
156248 |
caccactcttaccgtgaaaaaaaccaatg |
156220 |
T |
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