View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_91 (Length: 262)
Name: NF3223_low_91
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_91 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 44749926 - 44750093
Alignment:
| Q |
12 |
gaaaataactaaagatctaccactgatattaagatgagattgttgttgtcatcttagacgcataaaataaaagaacaaactagtccttctatatataata |
111 |
Q |
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| T |
44749926 |
gaaaataactaaagatctaccactgatattaagatgagattgttgttgtcatcttagacgcataaaataaaagaactaactagcccttctatatataata |
44750025 |
T |
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| Q |
112 |
cttgcagcatgaaaagagttgcacattccatgccacatctacgtaagcatgttaaagcgacaaaaaat |
179 |
Q |
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| T |
44750026 |
cttgcagcatgaaaagagttgcacattccatgccacatctacgtaagcatgttaaagcgacaaaaaat |
44750093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 44750135 - 44750169
Alignment:
| Q |
210 |
cctaaatacgcaggtttggacttttgatccgaaac |
244 |
Q |
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| T |
44750135 |
cctaaatacgcaggtttggacttttgatccgaaac |
44750169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 24198685 - 24198589
Alignment:
| Q |
48 |
agattgttgttgtcatcttagacgcataaaataaaagaacaaactagtccttctatatataatacttgcagcatgaaaagagttgcacattccatgc |
144 |
Q |
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| T |
24198685 |
agattgttgttatcatcttagcagcataaaacaaaagaacaaactagcccttctatatacaatacttgcagaatgaaaagagttgcacgtttcatgc |
24198589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 50197448 - 50197403
Alignment:
| Q |
49 |
gattgttgttgtcatcttagacgcataaaataaaagaacaaactag |
94 |
Q |
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| T |
50197448 |
gattgttgttgtcatcatagttgcataaaacaaaagaacaaactag |
50197403 |
T |
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