View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_low_93 (Length: 262)
Name: NF3223_low_93
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_low_93 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 37626499 - 37626744
Alignment:
| Q |
16 |
accaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgcaggtgactttatgc |
115 |
Q |
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| T |
37626499 |
accaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgcaggtgactttatgc |
37626598 |
T |
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| Q |
116 |
tcaagattacactataatagaaaattgaattaagtgtgtattgaatggattggttgcattgtatcatcgtatcagtgaccagtgattgtttgatcaaggt |
215 |
Q |
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| T |
37626599 |
tcaagattacactataataaaaaattgaattaagtgtgtattgaatggattggttgcattgcatcctcgtatcagtgaccagtgattgtttgatcaaggt |
37626698 |
T |
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| Q |
216 |
catctgacagtatttgtgattgaaaaaataaaatttgcttgatttct |
262 |
Q |
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| T |
37626699 |
catctgacagtatttgagatt-taaaaattaaatttgcttgatttct |
37626744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 37618117 - 37618276
Alignment:
| Q |
16 |
accaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgcaggtgactttatgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
37618117 |
accaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattagcagaaatatgcaggtgactttatgc |
37618216 |
T |
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| Q |
116 |
tcaagattacactataatagaaaattgaattaagtgtgtattgaatggattggttgcatt |
175 |
Q |
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| T |
37618217 |
tcaagattacactataataaaaaattgaattaagtgtgtattggatggattggttgcatt |
37618276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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