View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3225_high_2 (Length: 414)
Name: NF3225_high_2
Description: NF3225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3225_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 29597649 - 29598037
Alignment:
| Q |
11 |
caaaggcggaccatcaaaacagcaataattggttcaatatatggtgacactgaattaactgctccaggagggggtagcgatttcttgtatgtctcagtag |
110 |
Q |
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||||||||| ||| ||||||||||||| |||||||| ||||| |||||||| ||||||| || ||||||||||| | | ||||| ||||||||||||||| |
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| T |
29597649 |
caaaggcggtccagcaaaacagcaatagttggttcagtatatcgtgacactaaattaacagcaccaggagggggcaacaatttcctgtatgtctcagtag |
29597748 |
T |
|
| Q |
111 |
caagatcaagcgagataatcacaaatttctcaacagtaacatcctttggataaaaggaaatccagctaatagtgccactcaaatgcactccttggttcac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||| |||||||||||||||||||||||||||||| |
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| T |
29597749 |
caagatcaagcgagataatcacaaatttctcaacagtaacatccttcagataaatggatatccagttaacagtgccactcaaatgcactccttggttcac |
29597848 |
T |
|
| Q |
211 |
ataactatagccaagagtgtcaacaaggttataaggagtaaaacttgcaatttttctccaaatattatcattgaatccgaaaactttcacctcactagaa |
310 |
Q |
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||||||| ||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||| |||||| |
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| T |
29597849 |
ataactacagccaagggtatcaagaaggttataaggagtaaaacttacaatttttctccaaatattatcaccgaaacggaaaactttcacctccctagaa |
29597948 |
T |
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| Q |
311 |
cacaaaaccacaacattataagttctagttgaattatcatacccgaaggaaaaagtgagcttgcctggcctgcaaggttggtgacaagt |
399 |
Q |
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| T |
29597949 |
cacaaaaccacagcattataagttctagttgaaatatcatacccgaaggaaaaagttagcttgcctggtctgcaaggttggtgacaagt |
29598037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 29647639 - 29647259
Alignment:
| Q |
21 |
ccatcaaaacagcaataattggttcaatatatggtgacactgaattaactgctccaggagggggtagcgatttcttgtatgtctcagtagcaagatcaag |
120 |
Q |
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|||||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||| |
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| T |
29647639 |
ccatcaaagtagcaatagttggttcaatatatggtggcactaaattaactgctccaggagggggtagcagtttcttgtatgtctcggtaccaatatcaag |
29647540 |
T |
|
| Q |
121 |
cgagataatcacaaatttctcaacagtaacatcctttggataaaaggaaatccagctaatagtgccactcaaatgcactccttg---gttcacataacta |
217 |
Q |
| |
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|||||||||| ||||||| |||| ||||||||||| ||||||| ||||||||| ||| |||||||||||||| ||||||||| ||||||| |||| |
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| T |
29647539 |
cgagataatcgcaaatttatcaagagtaacatcctccggataaatggaaatccaattaacagtgccactcaaatacactccttgttggttcacaacacta |
29647440 |
T |
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| Q |
218 |
tagccaagagtgtcaacaaggttataaggagtaaaacttgcaatttttctccaaatattatcattgaatccgaaaactttcacctcactagaacacaaaa |
317 |
Q |
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| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |
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| T |
29647439 |
tggccaagggtatcaacaaggttataaggagtaaa-cttgcaatttttctccaaatattatcaccgaaacggaaaactttcacctcactagaacacaaaa |
29647341 |
T |
|
| Q |
318 |
ccacaacattataagttctagttgaattatcatacccgaaggaaaaagtgagcttgcctggcctgcaaggttggtgacaagt |
399 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29647340 |
ccacggcattataagttctagttgaattatcatacccgaaggaaaaagtgagcttgcctggtctgcaaggttggtgacaagt |
29647259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 31 - 399
Target Start/End: Complemental strand, 29642312 - 29641941
Alignment:
| Q |
31 |
agcaataattggttcaatatatggtgacactgaattaactgctccaggagggggtagcgatttcttgtatgtctcagtagcaagatcaagcgagataatc |
130 |
Q |
| |
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||||||| |||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
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| T |
29642312 |
agcaatagttggttcagtatatggtggcactaaattaactgctccaggagggggtagcagtttcttgtatgtctcggtaccaagatcaagcgagataatc |
29642213 |
T |
|
| Q |
131 |
acaaatttctcaacagtaacatcctttggataaaaggaaatccagctaatagtgccactcaaatgcactccttg---gttcacataactatagccaagag |
227 |
Q |
| |
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||||||| |||| ||||||||||| ||||||| ||||||||| ||| |||||||||||||| ||||||||| ||||||| | || |||||| | |
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| T |
29642212 |
gcaaatttatcaagagtaacatcctccggataaatggaaatccaattaacagtgccactcaaatacactccttgttggttcacaccatcatggccaaggg |
29642113 |
T |
|
| Q |
228 |
tgtcaacaaggttataaggagtaaaacttgcaatttttctccaaatattatcattgaatccgaaaactttcacctcactagaacacaaaaccacaacatt |
327 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |||| |
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| T |
29642112 |
tatcaacaaggttataaggagtaaaatttgcaatttttctccaaatattatcaccgaaatggaaaactttcacctcactagtacacaaaaccaccgcatt |
29642013 |
T |
|
| Q |
328 |
ataagttctagttgaattatcatacccgaaggaaaaagtgagcttgcctggcctgcaaggttggtgacaagt |
399 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||||| |
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| T |
29642012 |
ataagttctagttgaattatcatacccgaatgaaaaactgagcttgaataaattgcaaggttggtgacaagt |
29641941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 354
Target Start/End: Original strand, 19326262 - 19326431
Alignment:
| Q |
182 |
gtgccactcaaatgcactccttggttcacataactatagccaagagtgtcaacaaggttataaggagtaaaacttgcaatttttctccaaatattatcat |
281 |
Q |
| |
|
||||||||||||| |||||||| |||| | |||| |||||||||| || || ||| | |||||| ||| |||| |||||||||||||||||||||| |
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| T |
19326262 |
gtgccactcaaatacactccttcgttc---ttactaaagccaagagtaacagcatggtcaaaaggaggaaagcttgaaatttttctccaaatattatcac |
19326358 |
T |
|
| Q |
282 |
tgaatccgaaaactttcacctcactagaacacaaaaccacaacattataagttctagttgaattatcataccc |
354 |
Q |
| |
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| || | ||||||||||||||||||||||| ||| | ||| || |||||||||| |||||||||||||||||| |
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| T |
19326359 |
tcaaactgaaaactttcacctcactagaactcaagagcaccaccttataagttccagttgaattatcataccc |
19326431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 19344749 - 19344811
Alignment:
| Q |
94 |
cttgtatgtctcagtagcaagatcaagcgagataatcacaaatttctcaacagtaacatcctt |
156 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||| |||||| |
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| T |
19344749 |
cttgtatgtctcggtaccaagatcaagggagataatcacaaatttcccaacagtaatatcctt |
19344811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 19374663 - 19374608
Alignment:
| Q |
94 |
cttgtatgtctcagtagcaagatcaagcgagataatcacaaatttctcaacagtaa |
149 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
19374663 |
cttgtatgtctcggtaccaagatcaagggagataatcacaaatttcccaacagtaa |
19374608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 19326159 - 19326221
Alignment:
| Q |
94 |
cttgtatgtctcagtagcaagatcaagcgagataatcacaaatttctcaacagtaacatcctt |
156 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| ||||| ||| || |||| |||||| |
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| T |
19326159 |
cttgtatgtctcagtaccaagatcaagggagataatcataaattgctcgacggtaatatcctt |
19326221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 26256671 - 26256620
Alignment:
| Q |
94 |
cttgtatgtctcagtagcaagatcaagcgagataatcacaaatttctcaaca |
145 |
Q |
| |
|
|||||||||||| || | |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
26256671 |
cttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaaca |
26256620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 354
Target Start/End: Original strand, 24254770 - 24254881
Alignment:
| Q |
243 |
aaggagtaaaacttgcaatttttctccaaatattatcattgaatccgaaaactttcacctcactagaacacaaaaccacaacattataagttctagttga |
342 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||||| || || | ||||||||||| | |||| |||| | | ||| || |||||||||| |||||| |
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| T |
24254770 |
aaggaggaaaccttgaaatttttctccaaatattatccttcaaactgaaaactttcagtttactataacatatgaacaccaccttataagttccagttga |
24254869 |
T |
|
| Q |
343 |
attatcataccc |
354 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24254870 |
attatcataccc |
24254881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 24254600 - 24254662
Alignment:
| Q |
94 |
cttgtatgtctcagtagcaagatcaagcgagataatcacaaatttctcaacagtaacatcctt |
156 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| |||| |||||| |||| |||||| |
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|
| T |
24254600 |
cttgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatcctt |
24254662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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