View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3225_low_1 (Length: 522)
Name: NF3225_low_1
Description: NF3225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3225_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 7868973 - 7869486
Alignment:
| Q |
1 |
agagccagatatactttgataactcactggtgttggatagtgtcttctcggattgtctatctcaaaggaagaatcagccatggctagctagctacctagc |
100 |
Q |
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| T |
7868973 |
agagccagatatactttgataactcactggtgttggatagtgtcttctcggattgtctatctcaaaggaagaatcagccatggctagctagctacctagc |
7869072 |
T |
|
| Q |
101 |
agccagtgtttgatgtttgaaataagaagttacacagaaagtgataaaatgttcaactttgtgattagtgtacatagagattggtctaatttaatggttt |
200 |
Q |
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| T |
7869073 |
agccagtgtttgatgtttgaaataagaagttacacagaaagtgataaaatgttcaactttgtgattagtgtacatagagattggtctaatttaatggttt |
7869172 |
T |
|
| Q |
201 |
gtatgagaatatttgtataatatattgagactaacattgttgtagtacatggacggcatgtgatgctatatggccggctttggcatagttaattagttta |
300 |
Q |
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| T |
7869173 |
gtatgagaatatttgtataatatattgagactaacattgttgtagtacatggacggcatgtgatgctatatggccggctttggcatagttaattagttta |
7869272 |
T |
|
| Q |
301 |
agactagttttaacaatttcagcacatttctatttagaggataatgtttgcatagatctttttagtgacttatgtatgttcaaatcaaactttcttaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7869273 |
agactagttttaacaatttcagcacatttctatttagaggataatgtttgcatagatctttttagtgacttatgtatgttcaaatcaaactttcttaaaa |
7869372 |
T |
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| Q |
401 |
tagtcagaacaaaatctatttgtcattgtatgttggagaatctttgctccaaacaaacactaatgatacaagacataaaatgttgtgccggaactaacta |
500 |
Q |
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| T |
7869373 |
tagtcagaacaaaatctatttgtca-tgtatgttggagaatctttgctccaaacaaacactaatgatacaagacataaaatgttgtgccggaactaacta |
7869471 |
T |
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| Q |
501 |
aggatgatgatgtcc |
515 |
Q |
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| T |
7869472 |
aggatgatgttgtcc |
7869486 |
T |
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