View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3225_low_4 (Length: 204)
Name: NF3225_low_4
Description: NF3225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3225_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 45129008 - 45128870
Alignment:
| Q |
50 |
actctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggacaa |
149 |
Q |
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| T |
45129008 |
actctcgttatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggacaa |
45128909 |
T |
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| Q |
150 |
atatgatgtcactcttgatgtttgcatttcctctgtgct |
188 |
Q |
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| T |
45128908 |
atatgatgtcactcttgatgtttgcatttcctctgtgct |
45128870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 40280855 - 40280725
Alignment:
| Q |
58 |
tatgtaagtgagtacaatagagactcagtttcacctctttgttcaaaggttatgggattggtgagtaaagaaactagtagatttgtggacaaatatgatg |
157 |
Q |
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| T |
40280855 |
tatgtaagtgagtactatagaaactccatttccctgctttgttcaaaggtcatgagccaagtaagcagagaaaccagcaagtttgtggacaaatatgatg |
40280756 |
T |
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| Q |
158 |
tcactcttgatgtttgcatttcctctgtgct |
188 |
Q |
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| T |
40280755 |
ttacccttgatgtatgcatttcctcagtgct |
40280725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 6632166 - 6632101
Alignment:
| Q |
121 |
agtaaagaaactagtagatttgtggacaaatatgatgtcactcttgatgtttgcatttcctctgtg |
186 |
Q |
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| T |
6632166 |
agtacagaaacaagcagatttgttgacaagtatgatgtcactcttgatgtttgtatatcttctgtg |
6632101 |
T |
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