View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3226-Insertion-1 (Length: 482)
Name: NF3226-Insertion-1
Description: NF3226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3226-Insertion-1 |
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| [»] chr3 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 482
Target Start/End: Complemental strand, 22135385 - 22134915
Alignment:
| Q |
12 |
agagactccaagcttgcttctcatcatctcaaatcttcactttggaagaggcttagtcaaaatatcagcaagctgattttctgaactgcagtgcataagt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22135385 |
agagactccaagcttgcttctcatcatctcaaatcttcactttggaagatgcttagtcaaaatatcagcaagctgattttctgaactgcagtgcataagt |
22135286 |
T |
|
| Q |
112 |
ttcacttctttcatcctttccgcctctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggatatttagccattgatatgg |
211 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22135285 |
ttcacttatttcatcctttccgcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggatttttagccattgatatgg |
22135186 |
T |
|
| Q |
212 |
ctgagttgttatcaatccaaattgtagtagctttagttttctcttaacccagatccttcatgatttttctgagccaaatagcttggtttgcagctgctgc |
311 |
Q |
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||| |||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22135185 |
ttgacttgttatcgatccaaattgtagtagcttcagtttgctcttcacccagatccttcatgatttttctgagccaaatagcttggtttgcagcagctgc |
22135086 |
T |
|
| Q |
312 |
tgctgaaatatattcagcctctgccgtagattgagctacaatctcctgtttctttgacttccaagagaaaataccattgccaaatgaaaaaacataacca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22135085 |
tgctgaaatatattcagcctctgccgtagattgagctacaatctcctgtttctttgacttccaagagaaaataccattgccaaatgaaaaaacataacca |
22134986 |
T |
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| Q |
412 |
gaagtgctcttggaatcatcaacacttccagcccaatcactatctgcatagccttgaagcttcccatccat |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22134985 |
gaagtgctcttggaatcatcaacacttccagcccaatcactatcggcatagccttgaagcttcccatccat |
22134915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 22365005 - 22364941
Alignment:
| Q |
391 |
ccaaatgaaaaaacataaccagaagtgctcttggaatcatcaacacttccagcccaatcactatc |
455 |
Q |
| |
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|||| |||||||||||||||| ||||| || |||||||||||| |||||||||||||||||| |
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| T |
22365005 |
ccaagtgaaaaaacataaccacttgtgcttttagaatcatcaacagatccagcccaatcactatc |
22364941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 23678724 - 23678675
Alignment:
| Q |
403 |
acataaccagaagtgctcttggaatcatcaacacttccagcccaatcact |
452 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
23678724 |
acataaccagaagtgcttttcatgtcatcaacacttccagcccaatcact |
23678675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 24051000 - 24050951
Alignment:
| Q |
403 |
acataaccagaagtgctcttggaatcatcaacacttccagcccaatcact |
452 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
24051000 |
acataaccagaagtgcttttcatgtcatcaacacttccagcccaatcact |
24050951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 17386965 - 17387439
Alignment:
| Q |
8 |
ccttagagactccaagcttgcttctcatcatctcaaatcttcactttggaagaggcttagtcaaaatatcagcaagctgattttctgaactgcagtgcat |
107 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17386965 |
ccttagagactccaagcttgcttctcatcatctcatatcttgactttggaagaggcttagtcaaaatatcagcaagctgattttctgaactgcagtgcat |
17387064 |
T |
|
| Q |
108 |
aagtttcacttctttcatcctttccgcctctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggatatttagccattgat |
207 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| || |||||||||||||||||||||| ||||||||||||| |
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| T |
17387065 |
aagtttcacttctttcatcgtttccgcctctcttatggcatagagttttacattgatgtgtttcgttctaccatgctgaactggatttttagccattgat |
17387164 |
T |
|
| Q |
208 |
atggctgagttgttatcaatccaaattgtagtagctttagttttctcttaacccagatccttcatgatttttctgagccaaatagcttggtttgcagctg |
307 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17387165 |
atggctgacttgtaatcaatccaaattgtagtagcttcaatttgctcttcacccagatccttcatgatttttctgagccaaatagcttggtttgcagctg |
17387264 |
T |
|
| Q |
308 |
ctgctgctgaaatatattcagcctctgccgtagattgagctacaatctcctgtttctttgacttccaagagaaaataccattgccaaatgaaaaaacata |
407 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
17387265 |
ctgctgctgaaatatattcagcctctgccatagattgagctacaatctcctgtttctttgacttcgaagagaaaataccattgccaaatgaaaaaccata |
17387364 |
T |
|
| Q |
408 |
accagaagtgctcttggaatcatcaacacttccagcccaatcactatctgcatagccttgaagcttcccatccat |
482 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17387365 |
accagaagtgcacttggaatcatcaacacttccagcccaatcactatctgcatagccttgaagcttcccatccat |
17387439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 39949798 - 39949883
Alignment:
| Q |
136 |
tctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggatatttagccattgatatggctgagttgtt |
221 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| ||||| ||||| |||| ||||| ||| || |||| ||| ||||| ||||| |
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| T |
39949798 |
tctcttatagcatgaaattttacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgtt |
39949883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 39950053 - 39950117
Alignment:
| Q |
391 |
ccaaatgaaaaaacataaccagaagtgctcttggaatcatcaacacttccagcccaatcactatc |
455 |
Q |
| |
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|||| |||||||||||||||| ||||| || |||||||||||| |||||||||||||||||| |
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| T |
39950053 |
ccaagtgaaaaaacataaccacttgtgcttttagaatcatcaacagatccagcccaatcactatc |
39950117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 27206429 - 27206478
Alignment:
| Q |
403 |
acataaccagaagtgctcttggaatcatcaacacttccagcccaatcact |
452 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
27206429 |
acataaccagaagtgcttttcatgtcatcaacacttccagcccaatcact |
27206478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 196892 - 196956
Alignment:
| Q |
391 |
ccaaatgaaaaaacataaccagaagtgctcttggaatcatcaacacttccagcccaatcactatc |
455 |
Q |
| |
|
|||| |||||||||||||||| ||||| || |||||||||| | |||||||||||||||||| |
|
|
| T |
196892 |
ccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatc |
196956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 26898016 - 26898065
Alignment:
| Q |
403 |
acataaccagaagtgctcttggaatcatcaacacttccagcccaatcact |
452 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26898016 |
acataaccagaagtgcttttcatgtcatcaacacttccagcccaatcact |
26898065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 3945377 - 3945313
Alignment:
| Q |
391 |
ccaaatgaaaaaacataaccagaagtgctcttggaatcatcaacacttccagcccaatcactatc |
455 |
Q |
| |
|
|||| |||||||||||||||| ||||| || |||||||||| | |||||||||||||||||| |
|
|
| T |
3945377 |
ccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatc |
3945313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 26410610 - 26410561
Alignment:
| Q |
403 |
acataaccagaagtgctcttggaatcatcaacacttccagcccaatcact |
452 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26410610 |
acataaccagaagtgcttttcatgtcatcaacacttccagcccaatcact |
26410561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 30049123 - 30049059
Alignment:
| Q |
391 |
ccaaatgaaaaaacataaccagaagtgctcttggaatcatcaacacttccagcccaatcactatc |
455 |
Q |
| |
|
|||| |||||||||||||||| ||||| || |||||||||| | |||||||||||||||||| |
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|
| T |
30049123 |
ccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatc |
30049059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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